Mirounga leonina (Southern elephant seal): 118007357
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Entry
118007357 CDS
T07472
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3 isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118007357
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mlx03021
]
118007357
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118007357
Transcription machinery [BR:
mlx03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118007357
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
118007357
U7-dependent histone pre-mRNA processing factors
118007357
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
118007357
NCBI-ProteinID:
XP_034856305
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MSAIPAEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLID
PAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADD
MLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDF
SRQEDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPV
FALGRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININ
NPFVFKHISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVE
GTLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGE
QNEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGEKLAKVMGFLADKKPEQGQR
VSGILVKRNFNYHILSPCDLSNYTDLAMSTVKQTQAIPYTGPFNLLYYQLQKLTGDVEEL
EIQEKPALKVFKNITVIQEPGMVVLEWLANPSNDMYADTVTTVILEVQSNPKIRKGAVQK
VSKKLEMHVYSKRLEIMLQDIFGEDCVSVKDGSILSVTVDGKTANINLETRTVECEEGSE
EDESLREMVELAAQRLYEALTPVH
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcgattcctgctgaggaaagtgaccagctgctgatccgaccccttggagctggg
caagaagtaggaagatcatgtattatcctggagttcaaaggaagaaaaataatgttggac
tgtgggatccaccctggcctagaaggaatggatgctcttccttatattgatttaattgac
ccagctgagattgatctcctgttaattagtcatttccatttggatcactgtggagctttg
ccctggtttctacagaagacaagtttcaaaggaagaacatttatgactcatgctacaaaa
gctatttatagatggcttctttcagattatgtcaaagtcagtaatatatcagcagacgac
atgctgtatacagagacggatctggaagagagcatggacaaaattgaaaccatcaacttc
catgaagttaaagaagttgcaggaatcaagttttggtgttaccacgcaggccacgtccta
ggagctgccatgttcatgattgagatcgcgggcgtgaagctattgtacacaggtgatttc
tcaagacaagaagatagacacttaatggcagctgaaattcctaatattaaacctgatatt
cttattattgaatctacttatgggacccatatccatgagaagcgtgaagagcgagaagca
agattctgtaacactgttcatgacattgtaaacagagggggcagaggtctcattcctgtc
tttgctcttggaagggctcaggagctgctcttaattttagatgagtactggcagaatcac
ccagaactccatgatattcccatatactacgcatcctctttggccaagaagtgcatggca
gtataccagacgtatgtaaatgccatgaatgacaaaatccgcaaacagatcaacatcaat
aatccctttgttttcaagcacattagtaacctcaagagcatggatcattttgatgacatt
ggccccagcgtcgtcatggcctccccaggcatgatgcagagcggcttatccagagagctc
tttgaaagctggtgcacggataagaggaacggcgtcattatagcagggtactgtgtggaa
gggacgcttgccaagcatatcatgtctgagccagaagaaatcactaccatgtctggacag
aagttaccactgaaaatgtctgttgattacatttctttctctgctcacacagattaccag
caaaccagtgaatttattcgtgctttgaaaccgcctcatgtgattttagtccatggagaa
cagaatgaaatggccagattgaaagcagccctgattcgagaatatgaggacaacgatgaa
gttcacatagaggttcataatcctcggaatacagaagctgtgaccttgaatttcagagga
gaaaagctagccaaggtcatgggctttttagcagacaagaaaccagaacaaggccagcgg
gtctcaggaatacttgttaaaagaaactttaattatcacatactttctccttgtgatctc
tccaattatactgatttggccatgagcactgtgaaacagacccaagccattccctatacc
ggtccttttaatttgctctattaccaactacagaaattgacaggtgacgtggaagaatta
gaaattcaagaaaaacctgctctgaaagtattcaaaaatatcactgtcatacaggagcca
ggaatggtggtattagaatggctggcaaacccttccaatgacatgtatgcagacacagta
acaaccgtgatactggaagtccagtccaacccgaagataaggaaaggtgcagtacaaaag
gtttctaaaaaattagaaatgcacgtttatagcaagaggctggagatcatgctccaggac
atatttggagaagactgtgtaagtgtaaaagatggttctattctcagtgtcacagtggat
gggaaaactgctaatataaacttggagacacggactgtagaatgcgaagaagggagcgag
gaagacgaatccctgcgggaaatggtggagctggccgcgcagaggctgtacgaggccctc
acccccgttcactga
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