Mirounga leonina (Southern elephant seal): 118011978
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Entry
118011978 CDS
T07472
Symbol
COL4A3
Name
(RefSeq) collagen alpha-3(IV) chain
KO
K06237
collagen type IV alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04151
PI3K-Akt signaling pathway
mlx04382
Cornified envelope formation
mlx04510
Focal adhesion
mlx04512
ECM-receptor interaction
mlx04518
Integrin signaling
mlx04820
Cytoskeleton in muscle cells
mlx04926
Relaxin signaling pathway
mlx04933
AGE-RAGE signaling pathway in diabetic complications
mlx04974
Protein digestion and absorption
mlx05146
Amoebiasis
mlx05165
Human papillomavirus infection
mlx05200
Pathways in cancer
mlx05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
118011978 (COL4A3)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118011978 (COL4A3)
04518 Integrin signaling
118011978 (COL4A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118011978 (COL4A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118011978 (COL4A3)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
118011978 (COL4A3)
09154 Digestive system
04974 Protein digestion and absorption
118011978 (COL4A3)
09158 Development and regeneration
04382 Cornified envelope formation
118011978 (COL4A3)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
118011978 (COL4A3)
09162 Cancer: specific types
05222 Small cell lung cancer
118011978 (COL4A3)
09172 Infectious disease: viral
05165 Human papillomavirus infection
118011978 (COL4A3)
09174 Infectious disease: parasitic
05146 Amoebiasis
118011978 (COL4A3)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
118011978 (COL4A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlx04147
]
118011978 (COL4A3)
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118011978 (COL4A3)
Exosome [BR:
mlx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118011978 (COL4A3)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118011978 (COL4A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118011978
NCBI-ProteinID:
XP_034862876
LinkDB
All DBs
Position
Unknown
AA seq
1670 aa
AA seq
DB search
MSPRTAPRPPALLLPLLLVLLAAAPTTGKGCVCKDKGPCFCDGIKGEKGEKGFPGPAGYP
GQKGFPGPEGLPGPQGPKGSPGLPGLTGPKGVRGITGLPGFSGPPGLPGIPGHPGPYGPA
GVPGCSGPKGEQGFPGLPGTPGYPGIPGAVGLKGEKGAPAAEGIELDGRGDPGLPGAPGF
QGLPGLPGFPGPVGPPGPPGFSGFPGTMGPPGPKGSMGDKVIGQKGERGVKGLTGPPGPP
GTVIVTLTGPDNRTDLKGEKGDKGALGKSGPPGPSGPPGESYESQKGAPGEPGLQGKPGK
DGAPGFPGTEGAKGNRGFPGIRGKDGIKGWKGDIGPPGFRGPTEYYDSYQEKGDEGLPGP
PGPKGARGPQGPSGSPGVPGSAGSLRLGPRGAPGSPGVKGSKGERGPPGKNAVGPPGSPG
CPGSPGPVGLQGYPGPPGDIVFHKGPPGDGGLPGLVGFPGIPGADGPKGEPGLLCIQCPC
VPGPPGLPGLPGLDGIKGIPGGQGPSGITGSPGSPGSTGLPGFPGFPGALGDPGLKGEKG
EASQPEGEVGAPGDPGPRGHPGRRGLDGIPGTPGVQGSRGPKGEPALRGEKGDQGPPGYP
GTPGSPGPAGPPGPSNYGPQGEPGPKGTQGVPGAPGPPGEAGPKGEFSISTPVPGPPGPP
GPPGRAGPQGPPGVPGSTGKCGDPGLPGPDGEPGIPGIGFPGPPGPKGEQGFPGAKGASG
CPGEMGKPGSPGEPGLPGAKGEPRLAMPGEPGTPGFPGERGGSGENGEIGLPGPPGLPGI
PGTGGLDGPQGDPGKPGPPGEKGPPGRCTEGPRGAQGLPGLNGLEGQQGRRGETGPKGDP
GIPGLDRSGFPGEPGPPGMPGHRGEMGPPGQKGYPGNPGFFGLPGEKGIMGMMGYPGNTG
PPGPPGNPGTPGQRGSFGIPGAKGEKGPPGAKGEEGDKGPRGPSQISNLLGDKGEPGLKG
FAGKPGEKGNRGIPGFPGLKGLEGPPGPPGPPGLRGGPGSTGNPGEPGLHGGPGRMGNMG
VPGPKGHRGTSGLPGLTGRTGLPGVHGLRGDKGEPGYSADTRPGPPGPKGDPGLPGDMGR
KGERGLPGTPGHSGPTGTEGAPGNPGSPGHPGKPGPDGDLGLKGIKGFPGSPGVKGPPGP
PGLLGSPGPMGMRGSQGHDGIPGPAGEKGETGLLGAHPGPRGSPGAPGAKGDRGAPGLPG
LPGRKGAVGDAGPQGPTGVTGLPGPPGVPGTIIPGQKGNRGPPGLRGNPGETGPPGPPGS
RVRGIKGDKGLLGEPGPRGLPGTVGAEGPPGPPGAPGSPGLPGLRGDPGFHGFPGVKGEK
GNPGFLGPAGPPGQIGPKGPPGVRGDPGTVKIISLPGSPGPPGRAGGPGMQGEPGPPGPP
GILGPCGPRGKPGKDGIPGTPGPIGEKGNKGCKGEQGPPGSDGLPGLKGKPGHIGPRVTA
TMMRGFIFTRHSQTTAIPSCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTM
PFLFCNINDVCNFASRNDYSYWLSTPALMPMDMAPITGRALEPYISRCTVCEGPTNAIAI
HSQTTDIPSCPNGWISLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGRG
VCNYYSNSYSFWLASLNPQRMFRKPIPSTVKAGELEKIISRCRVCMKRRQ
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgagcccccggacggcgcccaggccgcccgcgctgctactgccgctcctcctggtgctc
ctggcggcggcgcccacgacaggcaagggttgtgtctgtaaagacaaaggcccgtgcttc
tgtgatgggatcaaaggggagaagggggagaaaggctttcctggacctgctggttatcca
ggccagaagggattccctggtcccgaaggcttgcctggaccacagggacccaagggctca
ccaggactcccaggactcactggtcccaaaggtgtgaggggaataactggattgccggga
ttttcaggtcctcctggacttccaggcatcccgggccatcctgggccttatggacctgct
ggtgtcccaggatgcagtgggcctaagggtgagcaagggtttccaggccttccggggaca
ccaggctacccggggatcccaggtgctgttggtttgaaaggagaaaagggtgctcctgct
gcagaaggtatagaacttgatggaagaggtgaccccgggttgccaggagctccgggattc
cagggtttaccaggacttccaggctttccaggacctgttggtccacctggccctccggga
ttctcaggctttccaggaaccatgggacctccaggacctaagggttccatgggcgataaa
gtgataggacaaaaaggagagcggggtgtgaaaggattaacaggaccccctggaccacca
ggaacggttattgtcacgctaacaggcccagataacagaacggatctcaagggggaaaag
ggagacaagggagccctggggaaatccggacctcctggaccctcaggaccgcctggagaa
tcttacgaatctcaaaaaggtgctcctggagagcctggcctgcagggaaaacctggcaaa
gatggtgcccctggtttccccggcactgagggagccaaaggcaacaggggcttccctggg
atacggggtaaagacggcattaaggggtggaaaggggacattggccctccaggatttcgt
ggtccaacagaatattatgattcgtaccaggaaaagggagatgaaggacttccaggccca
ccagggcccaaaggagctcgtggcccacagggtcccagcggctcccctggggttcctgga
agtgctgggtcattgaggcttggccccagaggagcccctggatctccaggagtgaaagga
agtaaaggggaacgagggcccccaggaaagaatgcagtggggcctcctgggtccccaggt
tgtcctggttcaccaggccctgttgggttgcagggatatccaggaccaccaggtgacatc
gtttttcacaaaggtccacctggagatggtggactcccaggccttgtagggtttccagga
atcccgggagccgatgggcccaaaggggaacctggcctcttgtgcatacaatgtccttgt
gtcccagggcccccaggtctcccaggactgccagggttggacggcataaaaggaatccca
ggaggacaagggccatctggcattacaggaagcccggggtccccaggaagtacgggtctt
ccaggatttccaggattcccaggtgctctgggggatccaggacttaaaggagaaaaaggt
gaagcgtctcagcctgagggagaagtgggtgccccaggggaccccgggcccagagggcat
cctggaagaaggggcttggatggaattcctggaactcccggggtccaaggatcacgagga
cccaaaggtgaaccggccctgagaggtgagaagggggaccagggtcctccagggtatcct
ggcacccctgggtccccaggacctgcaggaccacctggaccatcaaactatggaccacag
ggagagcctggtccaaagggcacccaaggagttcctggagcccctggaccacctggagaa
gccggtcctaagggagaattcagtatttcgacaccagtcccagggcccccaggacctcca
gggccccctggccgtgctggcccccaaggtccacctggtgtccctggatccacaggaaaa
tgtggtgatccaggtcttcctgggcctgatggtgaaccaggaattccaggaatcggcttc
cctggaccccctggacctaagggagagcaaggttttccaggagcaaaaggagcatcgggt
tgtccaggagaaatggggaagcccgggtcacctggagaaccgggtctcccaggagccaag
ggagaaccaagactagccatgcctggagaaccaggaacaccaggttttccaggagaaaga
ggcggttctggggaaaatggagaaattggactccctggacctccaggtctccctgggatt
ccaggaactggagggcttgatggaccccaaggggatccagggaagcctggaccacctgga
gaaaaaggacccccaggaaggtgcacggagggccccaggggagcccaaggacttccagga
ttaaatggattggaagggcaacaaggcagaagaggtgaaacagggccaaagggagaccca
ggtattccaggcttggataggtcaggctttcctggagaacctggaccaccaggaatgcca
ggtcatcgaggtgaaatgggaccacctggtcaaaaaggatatccaggaaatccaggattt
tttggactaccaggtgaaaaaggaattatggggatgatgggctatccgggaaacactggc
cctcctgggccccccgggaacccaggcaccccaggacagaggggtagctttggaattcca
ggagcaaagggtgagaaagggcccccaggagcgaagggggaagaaggagataaaggacct
cgggggccttctcaaatatccaatttactgggggacaaaggagaaccaggcctcaaagga
tttgctggaaagcctggtgagaaaggaaacagaggcattccagggttcccaggtttaaaa
ggactggaaggaccacctggaccaccaggtccaccaggcctcaggggaggtccaggcagc
actgggaatcctggagaaccaggactgcatggcgggccaggaagaatggggaacatgggg
gtgccaggtcctaaaggacacaggggaacttcgggactaccaggtttaactggaagaacg
ggtctcccaggtgttcacggtctccgaggagataagggagagccaggttattcggcagat
acaaggccgggaccaccaggaccaaagggagatccaggattgccaggtgacatgggaagg
aaaggagaaagagggctacctggcacccctggacattcggggcctactggaactgaggga
gcccctggaaatcccggaagtcccggccatccaggcaagccgggccctgatggtgatttg
gggttaaaaggcatcaaaggcttccctggttctccaggagtcaaaggccctccaggacct
ccaggattgctaggatctcctggaccaatgggtatgagaggcagccagggacatgatgga
attcctggtccagcgggagaaaaaggagaaacaggtttgctgggggcacatccaggcccg
agagggagccctggtgctccaggagccaaaggagacaggggcgccccgggcttacctggc
ctcccgggcaggaaaggggcagtgggagatgcggggccacagggacccactggcgtgaca
ggactcccagggccaccaggtgttcctggcacgatcatccctggccagaaaggaaatcga
ggcccaccaggcctcagaggaaatccaggtgagactggtcctccgggacctccagggagc
cgcgtaagaggcatcaaaggagacaagggactcctgggcgagcctggccccaggggtctg
cccggaactgtaggagccgaggggccaccgggtccgccgggagcaccaggaagcccaggt
ctgccagggctcagaggtgatcctggattccatggatttccaggtgtgaaaggggagaag
ggtaatccaggatttctaggaccagctggacctccagggcaaattgggccaaaaggacca
cccggtgtacgtggagaccctggcactgtcaagatcatctcccttccaggaagcccaggg
ccacctggccgtgctggaggaccaggaatgcaaggagaacctgggccaccagggccacca
ggaattctaggaccctgcgggccaagaggtaaaccaggcaaggatggaataccaggaact
cctgggccaattggagaaaaaggaaacaaaggttgtaaaggagagcaaggaccacctgga
tcagatggactgccaggcttgaaggggaaacctggacacattggaccacgtgtaactgca
acaatgatgagaggctttatcttcaccaggcatagtcagaccacagcgattccctcctgt
ccagaagggacagagccactctatagcgggttttctcttctttttgtacaaggaaatgaa
caagcccatggacaagacctgggaactctcggcagctgtctgcagcggtttaccacaatg
ccattcttgttctgtaacatcaatgatgtatgtaattttgcatctcgaaatgattattca
tactggctgtcaactccagctctgatgccgatggacatggctccaattactggcagggcc
ctggagccttatattagcagatgcactgtctgtgaaggtcctacgaatgccatagccatt
cacagccaaaccactgacattccctcatgtcccaatggctggatttctctctggaaagga
ttttcgtttatcatgttcacaagtgcgggttctgagggcgctgggcaagcactggcctcc
cctggctcctgcctggaagaattccgagccagtccatttatagaatgtcatggaagagga
gtgtgcaactactattcaaattcctacagtttctggttggcttcattaaacccccaaaga
atgttcagaaaacctattccatcaactgtgaaagctggggagttagaaaagataataagt
cgctgccgggtgtgcatgaagagaagacaatga
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