Mirounga leonina (Southern elephant seal): 118011980
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Entry
118011980 CDS
T07472
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04151
PI3K-Akt signaling pathway
mlx04382
Cornified envelope formation
mlx04510
Focal adhesion
mlx04512
ECM-receptor interaction
mlx04518
Integrin signaling
mlx04820
Cytoskeleton in muscle cells
mlx04926
Relaxin signaling pathway
mlx04933
AGE-RAGE signaling pathway in diabetic complications
mlx04974
Protein digestion and absorption
mlx05146
Amoebiasis
mlx05165
Human papillomavirus infection
mlx05200
Pathways in cancer
mlx05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
118011980 (COL4A4)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118011980 (COL4A4)
04518 Integrin signaling
118011980 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118011980 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118011980 (COL4A4)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
118011980 (COL4A4)
09154 Digestive system
04974 Protein digestion and absorption
118011980 (COL4A4)
09158 Development and regeneration
04382 Cornified envelope formation
118011980 (COL4A4)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
118011980 (COL4A4)
09162 Cancer: specific types
05222 Small cell lung cancer
118011980 (COL4A4)
09172 Infectious disease: viral
05165 Human papillomavirus infection
118011980 (COL4A4)
09174 Infectious disease: parasitic
05146 Amoebiasis
118011980 (COL4A4)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
118011980 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlx04147
]
118011980 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118011980 (COL4A4)
Exosome [BR:
mlx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118011980 (COL4A4)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118011980 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118011980
NCBI-ProteinID:
XP_034862877
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MHMASIRCSFRWIKPLAADPWSLILILFSVQHVYGSGKKFVGPCGGRDCSVCQCFHEKGS
RGQPGPLGPQGPIGPLGLPGPIGIPGEKGMRGDSGPPGAAGDKGDKGPTGVPGFPGLDGI
PGHPGPPGSRGKPGMHGYNGSRGDPGFPGERGVPGPGGPPGLPGESGEKGNSVFILGAIK
GIQGDRGDPGPPGLPGLRGARGPAGPMGHPGEPGLAGAPGHPGRPGLKGNPGVGVKGQMG
DPGEVGQQGSPGPTLLVQPPDSCLYKGEKGIKGMPGMTGPPGPPGPKGEPGIGAKGEKGI
PGFSGPRGDPGSYGSPGFPGLKGEPGLFGEPGSFGFLGPKGDPGDRGYPGPPGVLVTPSL
PLKGPPGDPGHPGRYGETGSVGPPGPPGPSGPPGEDCAGVMGPPGPRGLPGHPGFPGEAG
IPGRAESSPGKPGNPGPPGLPGAPGLQGPPGSDVIYCSVGHPGPQGIKGKVGPPGRRGSK
GEKGNTGLCACEPGPVGPPGPPGLPGRQGSKGDLGLPGWLGEKGHPGPPGAEGSPGPPGK
HGASGPPGSKGEKGDVVVSRVKGQKGERGLDGLPGFPGQEGQHGQDGLPGKKGDPGPPGD
HEDALPGDEGSPGPPGLPGRAGPRGQPGLGFPGPPGERGPPGAPGHPGERGLEGLKGQKG
DTISCNVTYPGRPGPPGFDGPPGPKGFPGPRGTPGLRCLDGQKGQRGKPGISEIPGPPGF
RGDMGDPGFGGGKGSSVLGPPGSPGSRGANGQKGVMGDTAYGQPGAPGKRGLSGVPGSKG
HRGDPGRPGFSGPAGRPGFPGLKGPRGTEGSAGFPGIPGPPGQSCKGGAPGIAGPPGVPG
APGQPGAPGWKGQRGDMGPPGPSGMKGLPGVPGRSGAHGPLGLPGVPGPSGDDGLPGLPG
PKGSQGLPGFPGFPGQRGKPGPEGRAGRKGDPGEDGRPGFLGDRGVKGAKGERGPPGDEG
EMAIISQKGKTGEPGPPGDGGFPGEEGDKGDPGMQGRKGEPGRHGAAGFHRGEPGRTGQP
GLPGSPGPPGSPGPRGIIGFPGFPGDQGEPGSPGSPGRSGIDGMRGPKGDKGDPASQFGS
PGPKGEPGSLGCPGHPGAPGEQGLPGVQGPTGSPGSPGLPGTSGPPGCPGNQGVPGLQGP
PGETGDPGPRGMMGDPGASGLPGIKGPSGSPGLNGLHGLKGQKGAKGTSGLHDVGPPGPV
GVPGLKGETGDPGSPGISPPGLSGGRGAPGPPGRPGSPGPAGAAGRAPKGDIPDPGPPGD
QGPPGPDGPRGVPGPPGPPGSVDLLKGEPGDCGLPGPPGTPGPPGPLGHKGFPGCDGKDG
QKGPIGFPGLQGPQGLPGLPGEKGLPGIPGRQGQPGLPGPRGEPGPPADVESCPRIPGLP
GVPGPRGPEGAMGVPGARGPPGPGCKGESGPDGRRGEDGPPGSPGPPGSKGDAGEAGCPG
VPGPPGPIGDPGPKGFGPGYLSGFLLVLHSQTDGEPACPAGMPRLWTGYSLLYLEGQEKA
HNQDLGLAGSCLPMFSTLPFAYCNIHQVCHYGQRNDRSYWLASAAPLPGTPLSEEEIRPY
ISRCAVCEAPAPVVALHSQDQSIPPCPRTWRSLWIGYSFLMHTGAGDQGGGQALMSPGSC
LEDFRAAPFLECQGRQGTCHFFANEYSFWLTTVRPDLQFSSAPSPDTLKESQAQRQRISR
CQVCMKHS
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgcacatggcgtcaataaggtgctcattcaggtggatcaagcccttggccgcagatccc
tggtcacttatacttatcctcttttctgtacaacatgtatatgggagtggaaagaagttt
gtgggtccttgcggaggaagagattgctcagtgtgccagtgctttcatgaaaaagggtct
cggggtcaaccaggaccactggggccacaaggtcctattggacccctgggactgccggga
cccattggcattccaggagagaaagggatgagaggtgacagtggtcctcctggggcagca
ggtgacaaaggtgataagggtccaactggtgttcctggatttccaggtttggatggcata
cctgggcacccagggcctcctggatccagaggcaagcctggcatgcacggctataatggt
tcacgaggtgatccagggtttccaggagagagaggagttcctggcccaggaggcccccca
ggccttcctggggaaagtggagaaaaaggaaattcagtgttcattttaggtgccattaaa
ggtattcagggcgacagaggggacccaggacctcctggcttgccgggattgaggggggca
agaggaccggcgggcccaatgggacatccgggagagcccgggttagccggtgctccaggc
catcctgggagaccgggcttgaagggtaatcctggcgtgggagtcaaggggcaaatggga
gacccgggtgaagttggccagcagggttctcctggacccaccttattggtacagccacct
gattcttgtctgtataaaggagaaaagggcataaaaggaatgcctggcatgactggacct
ccaggaccaccgggacccaagggagaacctggaattggggcaaaaggagagaagggtatc
cctgggttctcaggacctcggggtgatcccggttcctatggatctccaggttttccggga
ttaaagggggaaccaggactatttggagagcctggatcatttggatttcttggcccaaag
ggggatcccggagaccgtgggtacccaggaccaccaggggttttggtaactccatctctt
ccactcaaaggccctccaggggatccggggcaccctggccgctacggagaaacggggtct
gttggaccacctggtcctcccggcccctccggtccaccaggggaggactgtgcaggcgtg
atgggacctcctgggccaagagggcttcctggtcatccgggatttccaggggaagctggt
atccctgggagagctgaatccagtccaggaaagccagggaacccgggaccacccgggttg
cccggagccccagggctgcagggacctccgggatcagatgttatatattgtagtgttgga
caccctggaccacaaggaataaaaggcaaagtgggtcctccaggaagaagaggctcaaaa
ggagaaaaaggaaacacggggctctgtgcctgtgagcccggtcccgtgggcccaccagga
cctccgggacttcctgggaggcagggtagtaagggagacttggggctccctgggtggctt
ggagagaaaggtcacccaggccctcctggagctgaaggatctccaggaccaccagggaaa
catggtgcctcgggaccacctggcagcaaaggagaaaagggtgacgtggttgtatcaaga
gtgaaagggcagaaaggagaaagaggtcttgatgggctcccaggatttccaggacaagag
ggacaacatggtcaggatggacttcctggaaaaaagggggatccaggccccccaggggat
catgaagacgcattaccaggtgatgaagggtctcctggaccgccgggcctcccgggcaga
gcaggacctaggggacaaccaggtctgggatttcccggcccaccaggagagagagggcca
ccaggagctccaggccaccctggcgagaggggcctcgagggcttgaagggtcagaaaggc
gatacaatttcttgtaacgtcacttaccctgggaggccaggacccccaggatttgatggg
cctccaggaccaaagggatttccaggtcctcggggcactccggggttgaggtgtttggat
gggcaaaaaggtcagcgtggcaaaccaggaatatcagaaatacctggtccacctgggttt
cgtggtgacatgggcgatccaggttttggaggtggaaaggggtcctccgttctcgggccc
ccaggctcacctggttctcgtggagcaaatggtcagaaaggagtcatgggagacactgcc
tatggccaaccaggtgccccaggcaagagaggtctttcaggagtgccagggtcaaaagga
cacagaggtgacccgggacgtccaggcttttcagggccagctggcaggccgggattccca
ggtctcaaaggccccagaggcacagagggaagtgctgggtttccaggaatcccaggtcca
cctggtcagtcctgcaaaggaggcgccccagggatagcaggaccaccgggagtccctggg
gctccaggccagccaggtgccccaggttggaaaggacagcgaggggatatggggcctcct
ggtccatctggaatgaagggcctcccaggagttccaggacggtcaggggcacatggtccc
ttaggactcccaggtgtcccaggcccttcaggggatgatggactgcctggtcttccaggc
ccaaagggatcccaggggctgcctggcttccccggttttccggggcaaagaggaaagcct
ggccccgagggacgtgctggccgtaagggggacccgggagaagacggtcggcctggcttc
ctcggagaccgtggggtgaaaggtgccaaaggggagagaggacccccaggagatgaagga
gagatggctatcatttcccaaaaggggaaaactggggaacccggacctccaggagatggt
ggattcccaggagaagaaggtgataaaggcgatcctgggatgcaggggaggaaaggagag
ccgggaagacacggagcagccggatttcacagaggggagcctggtagaactgggcagcca
gggcttcctggctccccaggccccccaggctcccctgggccaagagggattattggtttt
ccgggatttccaggtgaccagggtgagccaggttctccagggtcccccggacgttcagga
attgatggaatgagaggacctaaaggagacaaaggtgaccctgcaagtcagtttggctca
cctggtccaaagggtgaaccaggtagccttggatgtccaggacatcctggagcacccggg
gagcagggcttgcccggtgttcaagggcccacaggatcaccaggaagtccaggactacct
ggtacctccggaccaccagggtgtccaggtaatcaaggggtgcctgggctgcagggacct
ccaggagaaacaggggatcctgggccaagaggcatgatgggagatccaggggcatcaggt
cttccaggaataaaaggtccctccgggtcacccggtctgaatggcttgcatggcttaaag
ggtcagaaaggagccaaaggcacttcaggtttgcacgacgtgggcccacctggtccagtg
ggcgtacccgggctgaaaggggagacgggagaccccgggagcccgggaatttctccccca
ggcctttctggaggaagaggtgcccccggccccccagggagacctggatcccctggtcct
gcaggtgccgcaggaagagctcctaaaggggacattcctgacccaggtccccccggagat
cagggacctcctggccccgacggtccaagaggagtgcccgggcccccaggcccccctggg
agtgtcgaccttctgaaaggggaaccaggagactgtggtctgccggggcctcctggtacc
ccgggcccacccggccctctaggacacaaaggcttcccaggatgtgatggaaaagatggc
cagaaaggaccaataggattcccagggctgcaggggccacaaggacttcctgggctcccc
ggggagaagggtttacctggcattccaggcaggcaagggcaacccggtcttccaggtccc
agaggtgaaccagggccacctgccgatgtggagtcctgcccccgaatccctgggcttccc
ggggtaccaggcccaagaggaccagaaggagccatgggggtccctggagcaagagggcct
ccaggaccagggtgcaaaggagagtctgggccggatggcaggaggggtgaggatggaccc
ccagggtcccctgggcctcctggaagcaaaggggacgcgggagaagccggctgccctgga
gtaccaggccctcctgggcccattggggaccctgggcccaaagggtttgggcctggatac
ctcagtggcttcctcctggttctccacagtcagacggatggcgaacccgcctgccccgcg
ggcatgcccaggctctggacgggctacagcctcttatacctggaaggacaggagaaggcg
cacaatcaagaccttgggctggcagggtcttgcctccccatgtttagcacgctgcccttc
gcctactgcaacatccaccaagtgtgccactacggccagaggaacgaccggtcctactgg
ctggcgagcgccgcgccgctgcccgggacgccgctgtcggaggaggagatccgcccctac
atcagccgctgtgccgtgtgcgaggccccggcgcccgtggtggctctgcacagccaggac
cagtccatccccccgtgcccgcggacctggaggagcctgtggatcgggtactcgttcctg
atgcacacaggggccggggaccagggaggagggcaggccctcatgtcccctggcagctgt
ctggaagatttccgagccgcaccgttcctcgaatgccaaggcaggcagggaacttgccac
ttttttgcaaacgagtatagcttctggctgacgacagtgagacctgacttgcagttttcc
tccgcgccctcgccagacaccttaaaagagagccaggcccagcgccagaggatcagcagg
tgccaggtgtgcatgaagcacagctag
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integrated database retrieval system
