Mirounga leonina (Southern elephant seal): 118016530
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Entry
118016530 CDS
T07472
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mlx03041
]
118016530 (YTHDC2)
Enzymes [BR:
mlx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118016530 (YTHDC2)
Spliceosome [BR:
mlx03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
118016530 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
nSTAND3
AAA_22
Ank
ATPase
PhoH
AAA_16
AAA_7
UvrD-helicase
AAA_29
T2SSE
SRP54
ABC_tran
AAA_23
Motif
Other DBs
NCBI-GeneID:
118016530
NCBI-ProteinID:
XP_034869822
LinkDB
All DBs
Position
Unknown
AA seq
1449 aa
AA seq
DB search
MSRPSSVSPRPPVPGGGGGPAQCGPGGGGRAKGLKDIRIDEEVKIAVNIALERFRYGDQR
EMEFPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCNLTHN
TKHAVRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVERG
ESEFDSFRQSLPVFEKQEEIVKIIKENKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCR
IFCTQPRRLAAIAVAERVAAERRERIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMA
GDSTLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGS
CPVIYIQGRPFEVKEMFLEDILRTTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENTF
KSESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDV
DAFAQVFHLILTENVSVDYRHSETSATALMVAAGRGFSSQVEQLISMGANVHSKASNGWM
ALDWAKHFGQTEIVDLLESYSASLEFGNLDESSLVHTNGSDLSAEDRELLKAYHHSFDDE
KVDLDLIMHLLYNICHGCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNTHRYQVFMLH
SNMQTSDQKKVLKNPPAGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNFVTM
LKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQELCLHTKL
LAPVNCPIADFLMKAPEPPPALIVRNAVQMLKTIDAMDAWEDLTELGYHLADLPVEPHLG
KMVLCAVVLKCLDPILTIACTLASRDPFVLPAQASQRRAAMLCRKRFTAGTCSDHMALLR
AFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVN
TNSENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANG
QAAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVLVFCGPARLASNALQEPSSFRA
DGIPNDSSDSEMEDRTTANLAALKLDEWLNFKLEPEPPGVPLPFAPALPFLETVLAKAAG
LLLQLRHKWHSLFLRRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRP
MSSEELPLASSWRSNNSRKTSADTEFSDESATAERVLMKSPSPALHPPQKYKDRGILHPK
RSTDDRSDQSSVKSTDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPIRYFIMKSSNLRNL
EISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWG
SAGLGGVFKVEWVRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWERL
PLGDKTATD
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggccgccggttcctggcggcgggggcggccca
gctcagtgcggccctgggggcgggggccgggccaaggggctgaaggacattcgtatagac
gaggaggtgaagatcgcagtcaatatcgctctggagcgcttccgatacggggatcagaga
gaaatggaatttccttcttctttgaccagcactgaaagagcttttattcatcgattgagt
cagtctcttggtttggtctctaaaagtaaaggaaagggagcaaatagatacctaactgtg
aagaagaaagatggatcagaaacagctcatgcaatgatgacctgtaatttgactcataat
acaaaacatgctgttaggagcctaattcaaagatttcctgtcaccaataaagagcgtact
gaacttctgcctaaaacagaaagaggaaatgtgtttgcagttgaagctgaaaaccgggaa
atgagcaaaacaagcgggcgactcaacaatggcatacctcagattccagtggaaagagga
gaatctgaatttgattctttcaggcagtctctgcccgtgtttgagaaacaagaagaaatt
gttaaaataattaaagaaaataaagtagttttgattgtaggagaaactggatctggaaag
actacgcagattcctcagttccttttagatgattgctttaaaaatggtatcccctgccgt
atattttgtacccagccaagacggttagcagcaattgctgtggccgaaagagttgctgca
gagagaagggaaaggattggtcaaacaattggatatcagatccggttagaaagcagggtt
tctccaaagacacttctgacattttgcactaatggggtattgcttcgtacgttgatggca
ggagatagtacattgtcgactgtgacacatgttattgtggatgaagtacacgaaagggat
cgatttagtgattttttacttacgaagttaagagatcttttgcaaaagcacccaactttg
aaacttattctttctagtgccgccttggatgtaaatctttttataagatattttggaagt
tgtccagtgatatatatacagggaagaccatttgaagtaaaagaaatgtttctggaagac
atcttaagaactactggatacacaaacaaagaaatgctaaaatacaaaaaggaaaaacaa
cgagaagagaaacagcaaaccacccttacagaatggtattccgctcaagagaatactttc
aagtctgagtctcagaggcagagaactgttcccaatgtgactgaagagtatgatttattg
gatgacggtggtgatgctgtcttcagccagttgacagaaaaagatgtgaattgccttgaa
ccatggttaataaaggaaatggatgcttgtctctctgacatatggctacataaagatgtt
gatgcctttgctcaggtctttcaccttattttaactgaaaatgttagtgttgattacagg
catagtgaaaccagtgcaacagctctgatggttgctgcaggacgaggtttttcaagtcaa
gtagagcagttaattagtatgggagccaacgttcatagtaaagcatcaaatggctggatg
gctttagattgggctaaacactttggacagactgaaattgtggatcttctagaatcttac
agtgcttcactggaatttggaaatctagatgaaagttctctggttcacacaaatggaagt
gacctcagtgcagaagacagagagctcctgaaagcttatcatcacagttttgatgatgaa
aaagtagacttggatttgatcatgcaccttctatacaatatctgccatggttgtgatgct
ggtgcaatattaattttcctacctggatatgatgaaattgttggactgagggatcgcatc
ctgtttgatgacaagcggtttgctgacaacacacatagataccaagtctttatgcttcat
tcaaatatgcaaacatctgatcaaaagaaagtattaaaaaacccacctgccggtgttcga
aaaataatcctttccaccaatattgctgaaaccagcatcacagtcaacgatgttgtcttt
gttattgattctggtaaggtgaaagagaaatcctttgatgcactgaattttgttacaatg
ttaaaaatggtgtggatttccaaagctagtgccatacaacgaaaaggcagggcagggaga
tgcagacctggaatttgtttccggctgttcagtagactccgattccagaatatgttggaa
tttcagactccagaacttttgagaatgccattacaggaactttgtttacatactaagctg
ttagccccagtgaattgtcctattgctgatttcctaatgaaagctccagaaccaccacca
gctctaattgtaagaaatgctgtacaaatgcttaagacaatagatgcaatggatgcatgg
gaggatctcactgagctgggctatcacttggctgacctgcccgtggagccacatcttggt
aaaatggtcctgtgcgctgtcgtcttaaagtgtctggaccccatcctcacaattgcctgc
acgctagcctctcgagacccctttgtcctgccggcccaggcctctcaaagacgggcggcc
atgctttgtaggaaacgcttcactgcgggaacttgcagtgaccacatggcccttctcaga
gcgttccaggcatggcagaaagcacgaagtgatggatgggagcgagccttttgtgagaag
aattttctttcacaagctaccatggaaataatcattggcatgagaactcagttgcttggt
caacttagagcatcaggttttgttagagcacgaggtggtggtgacattcgagatgttaac
acaaattccgagaactgggctgtcgttaaagctgcattggtggcaggcatgtatcctaat
ttagtccatgtggacagagagaatgtagtattgacagggccaaaggagaaaaaagttcgg
tttcatcccacttcagttctcagtcagcctcaatataaaaagattcctccagccaatggt
caggctgcagcgattcaggcactccccacagattggcttatttatgatgagatgaccaga
gcccacagaatagctaatattagatgttgttcggtagtgacccccgtcactgtgttggtg
ttctgtggaccggcgaggctggcaagtaacgctcttcaggaaccttcctcatttcgagcg
gatggtattcctaatgacagtagtgacagtgaaatggaagatagaactactgctaatttg
gcagctttgaagcttgatgagtggcttaatttcaaactagagcctgagcctcctggagtc
ccacttccatttgcaccagcccttcccttccttgaaacggtccttgccaaggcggccggt
ttgctgctgcagctccggcacaagtggcacagcttgtttttgcgccgaatgagagctccg
tctaaaccctggtctcaagttgatgaagccaccatccgagccatcatagctgtgctcagc
accgaagaacagtctgcgggcttacagcagccatcggggataggccagaggccaaggcct
atgtcttcagaagaactccctctggcatcgtcttggaggtcaaataacagtaggaaaacc
tcagcagatacggaattttcggatgagtctgcgactgcagaaagagtattgatgaaatct
ccatctccagcactgcacccacctcagaagtacaaagatagaggaattttacatcctaaa
cgaagcaccgatgaccgatcggatcaatcttctgtgaaatctacagacagcagtagctac
ccaagtccttgtgctagcccttctcctccatcctcgggaaagggctcaaaatctccttca
ccaagaccaaacatgcctattcgatacttcataatgaagagtagcaatttgagaaacctt
gaaatttctcaacagaagggtatctggtctacaacccctagtaatgagcggaagctaaat
cgagccttttgggaaagcagcatggtttacttggtattttctgttcaaggatctggacat
ttccagggattttctaggatgtcttctgagataggaagggagaagagccaggactggggc
tcagctggactgggaggagtatttaaggtggagtgggtccggaaggaaagtcttcccttt
cagtttgctcaccacttactcaatccctggaacgacaacaagaaagtccagatcagcaga
gacgggcaggaactagagcctcaggttggtgaacagttgctgcagttatgggaacgcctt
ccactgggagacaaaactgcaactgactga
DBGET
integrated database retrieval system
