Mirounga leonina (Southern elephant seal): 118016746
Help
Entry
118016746 CDS
T07472
Symbol
PCDH1
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118016746 (PCDH1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mlx01009
]
118016746 (PCDH1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mlx04515
]
118016746 (PCDH1)
Protein phosphatases and associated proteins [BR:
mlx01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118016746 (PCDH1)
Cell adhesion molecules [BR:
mlx04515
]
Cadherins
Protocadherins
118016746 (PCDH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
118016746
NCBI-ProteinID:
XP_034870232
LinkDB
All DBs
Position
Unknown
AA seq
1237 aa
AA seq
DB search
MDSRAGGRRCPEAALLIREPARMGPLRPSPGPGGQRVLLPPLLLAVLLLLAASPGHATRV
VYKVLEEQPPNTLIGSLAADYGFPDVGHLYKLEVGAPYLRVDGKTGDIFTTETSIDREGL
RECQNQLPGEPCILEFEVSITDLVQNGSPRLLEGQIEVQDINDNTPNFASPVITLPIPEN
TNIGSLFPIPVASDRDAGPNGVASYELQAGPEAQELFGLQVAEDQEGKQPQLIVMGNLDR
ERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAPKFERPSYEAELSENSPIGHSVI
QVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQGPVDREDLSTLRFSVLAK
DRGINPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISEDVAEETAVALVQVS
DRDEGENAAVTCVVANDVPFQLRQASETGSDSKKKYFLQTTTPLDYEKVKDYTIEIVAVD
SGNPPLSSTNSLKVQVVDVNDNAPVFTQSITEVAFPENNKPGEVVAEVTASDADSGSNAE
LVYSLDPEPAAKGLFSISPDTGEIRVKTSLDREQRDSYELKVVAADRGSPSLQGTATVLV
NVLDCNDNDPKFMLSGYNFSVMENMPALSPVGMVTVIDGDKGDNARVQLTVEQDNGDFVI
QNGTGTILSSLSFDREHQSTYTFQLKAVDGGVPPRSAYVGVTINVLDENDNAPFITAPSN
TSHQLLTPQTRLGETVSQVTAEDIDSGVNAELTYSIAGGNPYGLFQIGSHSGAITLEKEI
ERRHHGLHRLVVKVSDRGKPPRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAG
DPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPK
PSGKASKGNKGKGKKSKSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPP
GSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVGTGDTTSTGSEQYSDY
SYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLG
PLALPEDHYERTTPDGSIGEMEHPENDLRPLPDVAMTGTCTQECSEFGHSDTCWMPGQSS
PSRRTKSSALKLSTFVPYQDRGGQEPVGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHD
SCKDSATLEEIPLTQTSDFPPAATPASAQTAKREIYL
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atggacagcagggccggcggccggcgctgccccgaggcggccctcctgattcgagagcct
gccaggatggggcccctgaggcccagcccaggccccggggggcagcgggtgctgctgccc
cccttgctgctggcagtgctgcttctgctggcggcatccccaggccatgccactcgggtg
gtgtacaaggtgctggaggaacagccacccaacaccctcattgggagcctcgcagctgac
tatggctttccagatgtgggccacctgtacaaactagaggtaggcgccccctacctgcgg
gtggacggcaagacgggagacatcttcaccactgagacgtctattgaccgcgaggggctc
cgtgaatgccagaaccagctccctggtgagccttgcatcctggagtttgaggtgtctatt
acagacctggtgcagaacggcagtccccggctgttagagggccagatagaggtacaggac
atcaatgacaacacgcccaacttcgcctcgcccgtcatcacgctacccatccccgagaac
accaacatcggctcactcttccccatcccggtggcttctgaccgcgacgctggccccaac
ggtgtggcatcctatgagctgcaggccgggcccgaggcccaggagctgtttgggcttcag
gtggcggaggaccaggaggggaagcagccacagctcatcgtgatgggcaacctggaccgg
gagcgctgggattcctatgacctcaccatcaaggtgcaggacggtggcagccccccacgt
gccagcagtgccctgctgcgagtcactgtccttgacaccaatgacaacgcccccaagttc
gagcggccctcctacgaggctgaactgtccgagaatagccccatcggccactcggtcatc
caggtgaaggccaatgactcggaccaaggtgccaacgcggagatcgactacacattccac
caggcgcccgaggtggtgaggcgtcttctgcgactggacaggaacactggacttatcact
gtgcagggccctgtggatcgtgaggacctaagtaccctgcgcttctcggtgctcgccaag
gaccgaggcatcaaccccaagagtgcccgtgcccaagtggtggtgaccgtgaaggacatg
aacgacaatgcccccaccatagagatccggggcatagggttggtgacccatcaagacggg
atggctaatatctcggaggacgtggcagaggagacagccgtggccctggtgcaggtatct
gaccgagatgagggagagaatgcagctgtcacctgtgtggtggcaaatgacgtgcccttc
cagctacgccaggccagtgagacgggaagtgacagcaaaaagaaatacttcctgcagacc
accactccactcgactacgagaaggtcaaagactacaccatagagattgtggctgtggac
tctggcaaccccccgctctccagcaccaactcgctcaaggttcaggtggtggacgtcaat
gacaacgcccctgtcttcacccagagcatcactgaggtcgccttcccagagaacaacaag
ccgggtgaagtggtcgccgaagtcaccgccagcgatgccgactcgggctctaatgcggag
ctggtttactctctggatcctgagccagccgccaagggcctcttcagcatctcgcctgac
actggagagatccgggtgaagacatcccttgatcgggaacaacgggacagctatgagtta
aaggtggtggcagctgaccggggcagccccagcctgcagggcacagccaccgtccttgtc
aatgtgctggactgcaatgacaatgaccccaagtttatgctgagtggctacaacttctca
gtgatggagaacatgccggcactgagtccagtgggcatggtgactgtcattgatggggac
aaaggggacaatgcccgggtgcagctcacagtggagcaggacaatggtgactttgttatc
caaaatggtacgggcaccatcctctccagcctgagctttgatcgggagcatcaaagcacc
tataccttccagctgaaggcggtggacggtggcgtcccgcctcgctcagcttacgtcggc
gtcaccatcaatgtgctggatgagaatgacaacgcgccctttatcaccgccccttccaac
acctcccaccagctgttgaccccccagacacgtcttggtgagacggtcagccaggtgaca
gctgaggacatcgactccggtgtcaatgctgagttgacctacagcatcgctggtggcaac
ccttacggactcttccagattgggtcgcactcaggagccatcacacttgagaaggagatt
gagcggcgccaccacgggctgcaccgcctggtggtgaaagtcagtgaccggggcaagccc
ccgcgctatggcacggccttggtccacctttatgtcaatgagaccctggccaaccgcacg
cttctggagaccctgctgggccacagcctggacacaccactggacatcgacatcgctggg
gatccggagtacgagcgctccaagcagcggggcaacatcctctttggggtggtggccggg
gtggtggccgtggccttgctcattgccctggcggtgcttgtgcgctactgccggcagcgg
gaggccaagagtggctaccaggccggtaagaaggagaccaaggacctgtacgcccccaag
cccagcggcaaagcctccaagggaaacaagggcaagggcaagaagagcaagtccccgaag
cctgtgaagccagtggaagacgaggacgaggccgggctgcagaaatccctcaagttcaac
ctgatgagcgacgcgcccggagacagcccccgcatccacctgccgctcaactaccccccg
ggcagccccgacctgggccgccactaccgctccaactccccactgccttccatccagctg
cagccccagtcaccctcggcctccaagaagcaccaggtggtgcaggacctgccacccgca
aacacatttgtgggcactggtgacaccacgtccacgggctctgagcagtactccgactac
agctaccgcaccaacccccccaaataccccagcaagcagttacctcaccgccgcgtcacc
ttctccgccaccagtcaggcccaagagctgcaggacccgtcccagcacagttactatgac
agtggcctggaggagtctgagacgccatccagcaagtcatcctcgggaccccgactcggt
cccctggctctgcctgaggatcactatgagcgcaccacccccgatggcagcataggagag
atggagcaccccgagaacgacctgcgccctttgcctgatgtggccatgacgggcacatgt
acccaggagtgcagcgagtttggccactccgacacgtgctggatgcctggccagtcgtct
cccagccgccggaccaagagcagcgccctcaaactctccaccttcgtgccttaccaggac
cgaggagggcaggagcctgtgggcgccggcagccccagccccccggaagaccggaacacc
aaaacggcccccgtgcgcctcctgccctcctacagtgccttctcccacagtagccatgat
tcctgcaaggactcggccaccttggaggaaatccccctgacccagacctcggacttccca
cctgcagccacaccggcatctgcccagacagccaagcgcgagatctacctgtga
DBGET
integrated database retrieval system
