Mirounga leonina (Southern elephant seal): 118016790
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Entry
118016790 CDS
T07472
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118016790 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118016790 (MTREX)
03041 Spliceosome [BR:
mlx03041
]
118016790 (MTREX)
03009 Ribosome biogenesis [BR:
mlx03009
]
118016790 (MTREX)
03016 Transfer RNA biogenesis [BR:
mlx03016
]
118016790 (MTREX)
Enzymes [BR:
mlx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118016790 (MTREX)
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
118016790 (MTREX)
Spliceosome [BR:
mlx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
118016790 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
118016790 (MTREX)
Ribosome biogenesis [BR:
mlx03009
]
Eukaryotic type
Pre-60S particles
Helicases
118016790 (MTREX)
Transfer RNA biogenesis [BR:
mlx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
118016790 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
118016790
NCBI-ProteinID:
XP_034870319
LinkDB
All DBs
Position
Unknown
AA seq
1042 aa
AA seq
DB search
MADAFGDELFSVFEDDSTAAPGTKKDNEKEKGKWKGPPGSAEKGGKRFDGKLQSESTNIG
KSKRDADFEGTDEPIFGKKPRMEESVTEDLSLADLMPRVKVQSVETVEGCTHEVALPADE
DYLPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALR
EKQRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGS
EVMREVAWVVFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLH
KQPCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGD
QKGRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMV
EEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALF
ATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVD
EKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPG
VVEKVKNSEEQYNKIVIPNEESVIIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLV
KVKNEGDDFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKP
DEKGEMQVVPVLVHLLSAISSVRLYIPKDLRPVDNRQSVLKSIQEVQKRFPDGVPLLDPI
DDMGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELK
KARTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDL
SAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLS
SFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELE
NKFAEGITKIKRDIVFAASLYL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgaactgttcagcgtgttcgaggacgactcgaccgccgcg
cccggaactaaaaaagacaacgagaaagaaaaggggaaatggaaggggccgccggggtct
gcggaaaagggcgggaaacgttttgatggtaaattgcaatcagagtcaactaatattgga
aaatccaagagagatgcagattttgagggcacagatgaacccatttttggaaagaagcct
aggatggaagaatcagtaactgaagatttaagtttggcagacttgatgcccagagtcaag
gtacaatctgttgaaactgtcgaaggatgtacacatgaggttgcacttcctgcagatgaa
gattatttaccacttaaacctcgagttggaaaagctgcaaaggaatacccgttcattctt
gatgcttttcaaagagaagccattcagtgtgttgataataatcagtctgttttagtatct
gcacatacatcagcaggaaaaactgtatgcgctgagtatgccattgcattggccttaagg
gaaaaacagcgtgtaatatttaccagcccaattaaggctctgagtaaccagaaataccgg
gaaatgtatgaagaatttcaggatgttggcttgatgactggagatgttactattaatcct
acagcatcttgtcttgttatgaccacagagattttgagaagcatgctgtacagaggttct
gaagttatgcgagaagtagcgtgggtcgtatttgatgaaattcattacatgagagattca
gagcgtggtgttgtatgggaagaaactattattttgcttcctgacaatgtccactatgtg
tttctttcggctactattccaaatgcccgacagtttgctgaatggatttgccatttacat
aagcagccttgtcatgtaatttacacagattatcggcccactccattgcagcactacatt
tttccagcagggggagatggcctgcaccttgtggttgatgaaaatggtgacttcagagaa
gataattttaatactgcaatgcaagtacttcgagatgctggtgatttggcaaaaggagat
cagaaggggcggaaaggaggaacaaaaggaccatcgaatgtgttcaagattgtgaagatg
attatggaaagaaattttcaacctgtaattattttcagtttcagtaaaaaggactgtgaa
gcctatgcacttcagatgaccaaattagattttaacacagatgaagaaaagaagatggtt
gaagaagtattcagtaatgccattgactgcttgtctgatgaagataaaaaactccctcag
gttgaacatgtacttcctcttttgaagcgagggattggtattcaccatggtggtttactt
cctattttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttattt
gccacagagacttttgctatgggaattaatatgccagctagaactgttttatttacgaat
gcccggaaatttgatgggaaagatttccgatggatttcctctggtgaatacattcagatg
tctggtcgagctggaaggaggggaatggatgatagaggaattgtaattcttatggtggat
gaaaagatgagcccaacgatcggaaaacaactacttaagggctcagctgatcctctaaat
agtgctttccatttgacctacaacatggttttgaacttactacgtgtagaagaaattaat
cccgagtacatgttggaaaaatccttctaccagtttcagcattatagagcaattccagga
gtagtagagaaggtaaagaactcagaagaacagtataataaaatagtaataccaaatgag
gaaagtgtcattatttattataagattagacagcagcttgccaaactgggtaaagaaatt
gaagaatacattcataaaccaaagtattgcttaccatttctacagccaggtcgtttggta
aaggtaaagaatgaaggagatgattttggctggggagtagtggtaaatttctcaaagaag
tcaaatgttaagcctaattctggtgaactggatcctttatatgtagttgaagtactcctg
cgctgtagcaaagaaagtctgaaaaattcagctactgaggctgcaaaaccagctaaacct
gatgagaaaggagagatgcaggttgttccagttttggtgcacctcttgtctgccatcagc
agtgttaggctgtacattcctaaagaccttcgaccagtggataatagacagagtgtttta
aaatcaatacaggaagttcagaaacgttttcctgatggtgttcctttattagatcctatt
gatgatatgggcattcaagatcaagggctgaaaaaagttatccagaaagtggaggctttt
gagcatagaatgtattctcatccacttcacaatgatccgaatttggaaactgtgtatacg
ctttgtgaaaaaaaagcacagattgcaattgatattaaatctgcaaagcgagaattaaag
aaggcaagaactgtcctacaaatggatgagctcaaatgtcgcaaacgtgttttaaggagg
ttgggatttgctacttcttctgatgtcatagagatgaaaggacgagtggcttgtgagata
agcagtgctgatgagctccttctaactgagatgatgtttaatggccttttcaatgacctc
tctgcagaacaggcaacggcactactaagctgctttgtgtttcaagagaattctagtgag
atgcccaaattaacagagcagttagcaggaccacttcgtcaaatgcaggaatgtgctaaa
agaattgcaaaagtttcagcagaagccaaactggaaattgatgaggaaacttacctaagc
tcattcaaacctcacttaatggatgtagtatatacctgggcaactggagctacatttgcc
catatctgcaaaatgacagatgtctttgaaggcagcataattcgttgtatgaggcgcctg
gaagaactgcttcgacagatgtgtcaagcagcaaaagccattggaaacactgagctggaa
aacaaatttgcagaaggaatcaccaaaatcaagagggatattgtgtttgctgccagcctc
tacttataa
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