Mirounga leonina (Southern elephant seal): 118020392
Help
Entry
118020392 CDS
T07472
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04820
Cytoskeleton in muscle cells
mlx04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
118020392 (COL11A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118020392 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118020392 (COL11A1)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118020392 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
118020392
NCBI-ProteinID:
XP_034876171
LinkDB
All DBs
Position
Unknown
AA seq
1750 aa
AA seq
DB search
MERWSSRWKTKRWLWNFTITTLALTFLFQAREVRGGENFPEDFSILFTIKPKKGIQSFLL
SIYNEHGIQQIGVEVGRSPVFLFEDHTGKPAPEDYPLFRTVNIADGKWHRVAISVEKKTV
TMIVDCKKKTTKPLDRSERAIVDTNGIMVFGTRILDEEVFEGDIQQLLIIGDPKAAYDYC
EHYSPDCDSSVPKAAQAQEPQIDEYAPEDIMEYDYEYGEAEYKEAEFVTETPTVTEETIA
QTEANIVDDFQEYSYGTEESYQTEAPRHVSGPNEPNPLEEVFTEEYLTGEDYDSQRKNSE
DTLYENKGVDGRDPDLLVDGDLGEYDFYEYKEYEDKPTNPTNEEFGPGVPAETDITETSI
NGHGGYGEKGQKGEPAVVEPGMLIEGPPGPAGPAGLMGPPGLQGPTGPPGDPGERGPPGR
PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL
TGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKPGKRGRPGADGGRGMPGEPGA
KGDRGFDGLPGLPGDKGHRGERGPQGLPGPPGEDGMRGEDGEIGPRGLPGEAGPRGLLGP
RGTPGPTGQPGIAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGP
QGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGS
KGEKGEDGFPGFKGDMGLKGDRGEVGQVGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGK
LGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGP
TGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGF
QGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGI
SGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGPIGLPGR
PGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGEIGEPGQ
KGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGARGFPGPPGP
IGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSVGGVGEKGE
PGEAGNPGPPGEAGTGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGFPGD
PGPPGEPGPAGQDGVGGDKGEDGDPGQQGPPGPSGEAGPPGPPGKRGPPGAAGSEGRQGE
KGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPVGP
PGLPGLKGEPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP
IGPPGPPGLPGPQGPKGTKGSAGPAGQKGDSGLPGPPGPPGPPGEVIQPLPILSPKKTRR
HVENMQADAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQTNPARTCKDLQLSHPD
FPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDKKSEGVRISSWPKEKPGSWFSEFK
RGKLLSYLDVEGNSINMVQMTFLKLLTASARQNFTYTCHQSAAWYDVSAGSYDKALRFLG
SNDEEMSYDNNPYIKALYDGCASRKGYEKTVIEINTPKIDQVPIVDVMINDFGDQNQKFG
FEVGPVCFLG
NT seq
5253 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtggtcctctaggtggaaaacgaaacggtggctctggaatttcaccataaca
accctcgcattgactttcctcttccaggctagagaggtcagaggaggagaaaattttcca
gaagatttttcaatattatttacaataaaacccaaaaaaggaattcagtcttttctttta
tctatatataatgagcacggtattcagcaaatcggtgttgaggttgggagatcacctgtt
ttcctctttgaagaccacactggaaaacctgccccagaagactatcccctcttcagaact
gttaacatcgctgatgggaagtggcatcgggtagcaatcagtgtggagaagaaaactgtg
acaatgattgttgattgtaagaagaaaaccacaaagccacttgatagaagtgagagagca
atcgttgacaccaatggaatcatggtttttggaacaaggattctggatgaagaagttttt
gagggggacatccagcaactattgatcataggtgaccccaaagccgcatatgactactgt
gagcattacagcccagactgtgactcttcagtgcccaaggccgctcaggctcaggaaccg
cagattgatgagtatgcacctgaggatataatggaatatgactatgagtatggggaagca
gagtataaggaggctgaatttgtaacagaaacacccactgtaactgaggagacaatagca
caaactgaggcaaatatcgttgatgattttcaagaatacagctatggaacagaggaaagt
taccagacagaagctcctaggcatgtatctggaccaaatgagccaaatccacttgaagaa
gtatttactgaagaatatctaactggagaggattatgattcccagaggaaaaattccgag
gatacactatatgaaaacaaaggagtagacggcagggaccctgaccttctggtagatgga
gatttaggcgaatatgatttttatgaatataaagaatatgaagataaaccaaccaatccc
actaatgaagaatttggtccaggtgtgccagcagaaacagatatcacagaaacaagcata
aatggccatggtggatatggagaaaaggggcagaaaggagaaccagcagtagttgaacct
gggatgcttattgaaggaccaccaggaccagcaggacctgcaggtcttatgggtcccccc
ggtctacaaggccccactggaccccctggtgaccctggagagaggggtcccccaggacgt
cctggcttaccaggggctgatggtctacctggtcctcctggtaccatgttaatgttaccg
tttcgttatggtggcgatggttccaaaggaccaaccatctctgctcaggaagctcaggcc
caggcgattcttcagcaggctcggattgctctgagaggtccacctggcccaatgggtcta
actggaagaccgggtcctgtgggggggcctggttcatctggcgccaaaggtgagagtggt
gatccaggtcctcagggccctcgtggtgttcaaggtccgcctggtccaacgggaaaacct
ggaaaaaggggtcgtccaggtgctgatggaggacgaggaatgccaggagaacctggggcg
aagggggatcggggatttgatggacttccgggtctgccaggtgacaaaggtcacaggggt
gaacggggtccccaaggtcttcctggtcctcctggagaagatgggatgaggggagaagat
ggagaaataggaccgaggggtcttccaggtgaagctggcccacgaggtctgctgggacca
agggggactccaggacctactgggcagcctggtattgcgggtgtagatggccccccagga
ccaaaaggaaacatgggtccccaaggggagcctggacctccagggcagcaagggaatcca
ggacctcagggtcttcctggtccacaaggtccaattggtcctcctggtgaaaaaggacca
caaggaaaaccaggccttgcaggacttcctggtgctgatgggcctcctggtcatcctgga
aaagaaggccagtctggagaaaaaggtgctctgggtccacctggtccacagggtcctatt
ggctaccctggtccccgaggagtaaagggagcagatggtgtcagaggtctcaagggatct
aaaggtgaaaagggtgaagatggttttccaggattcaaaggtgacatgggtcttaaagga
gatagaggagaagttggtcaagtgggtccaagaggagaagatggccctgaaggacccaaa
ggtcgagcaggtccaactggagaccctggtccttctggtcaagcaggagaaaaggggaaa
cttggtgttccaggattaccaggatatccaggaagacaaggtccaaagggttccactgga
tttcctgggtttccaggcgccaatggagagaaaggtgcacggggtgtcgctggcaaacca
ggccctcggggtcagcgtggtccaacgggtcctcgaggttcgagaggcgcgagaggcccc
actgggaaacccggcccgaagggcacttcaggtggtgatggccctccaggccctcctggt
gaaagaggccctcaaggacctcagggtccagttggattccctggaccgaaaggccctcct
ggtccacctgggaaggatggcctaccaggacaccctggacaacgtggagagactggattt
caaggcaagactggcccccctgggccagggggtgtcgttggaccacagggaccaactggc
gagactggtcccataggtgaacgaggacatcctggccctccaggacctcctggtgagcaa
ggtcttcccggtgctgcaggaaaagaaggtgcaaagggtgacccaggtcctcaaggtatc
tcagggaaagacgggccagcaggactacgtggtttcccaggtgaaagaggtcttcctgga
gctcagggtgcacctggactgaaaggaggggaaggtccccagggcccaccgggtccagtt
ggctcaccaggagaacgtggatcagcaggtacagctggcccaattggtttgccagggcgt
ccaggcccccagggtcctcctggtccagctggagagaaaggtgctcctggagaaaaaggt
ccccaagggcccgctgggagagatggagtccaaggccctgtgggtctcccagggcctgct
gggccggcgggctcccctggagaagatggggacaagggtgaaattggtgaaccgggacag
aaaggcagcaagggtgacaaaggagaaaatggtcctcctggtcccccaggtcttcaaggt
cccgttggtgcccctggcattgctggaggtgatggtgagccaggtcccagaggtcagcag
gggatgtttggacaaaaaggtgatgagggtgccagaggtttcccaggacctcctggtccc
ataggtcttcagggtctgccgggcccacctggtgaaaaaggtgaaaatggggatgttggt
cccatgggtccacctggtcctccaggcccaagaggcccacagggtcccaatggagctgat
ggaccacaaggacccccaggatccattggttcagttggtggtgttggagaaaagggtgaa
cctggagaagcagggaacccggggcctcctggggaagcgggcacaggtggccccaaaggg
gaaagaggagagaaaggagaagctggtccgcctggtgctgctggacctcctggagctaag
ggaccaccaggtgatgatggcccgaagggtaacccgggtcctgttggttttcctggagat
cctggtcctcctggggaacctggccctgcaggtcaagatggtgttggtggtgacaagggt
gaggatggagatcctggtcaacagggtcctcctggcccatctggtgaggctggcccacca
ggtcctcctggaaaaagaggtcctcccggagctgcaggttcagagggaagacaaggtgaa
aaaggtgctaagggagaagcaggtgccgaaggtcctcctggaaaaactggcccagttggt
cctcagggacctgccggaaagcctggtccagagggtcttcggggcatccctggcccggtg
ggagaacaaggtctccctggagctgcaggccaagatggacctcctggtcctgtgggacct
cctggcttacctggcctcaaaggtgaacctggctccaagggcgagaagggacatcctggt
ttaatcggcctgattggtcctccaggagaacaaggtgaaaagggtgacagaggactccct
ggaactcaaggatctccaggagcaaagggggatggaggaattccaggtcctgctggtccc
ataggtccacctggtcctccaggcttaccaggccctcaaggaccaaagggtaccaaaggc
tctgctggacctgccggccagaagggtgacagtggtcttccagggcctcctgggcctccg
ggtccacctggtgaagtcattcagcctttaccaatcttgtcacccaaaaaaacaagaaga
catgttgaaaacatgcaagcagatgcaggtgataatattcttgattactcggatggaatg
gaggaaatatttggttccctcaattccctgaaacaagacatcgaacatatgaaatttcca
atgggtactcagactaacccagcccgaacttgcaaagacctgcaactcagccatccggac
ttcccagatggtgaatattggattgatcctaaccaaggatgctcaggagattccttcaaa
gtttactgtaatttcacatctggtggtgagacttgcatttatccagacaaaaaatctgag
ggagtaagaatatcatcatggccaaaggagaaaccaggaagctggtttagtgaatttaag
agaggaaaactgctttcctatttagatgttgaaggaaattccattaatatggtgcaaatg
acattcctgaaactgctgactgcctccgcccggcaaaacttcacctacacctgtcatcag
tcagccgcctggtacgatgtgtcagcgggaagttacgacaaggcacttcggttcctggga
tcaaatgatgaggagatgtcctatgacaacaacccttacatcaaagcactatatgatggc
tgcgcatccagaaaaggctatgaaaaaactgtgattgaaatcaatacaccgaaaattgat
caagtacctatcgttgatgtaatgatcaatgactttggtgatcagaatcagaagtttgga
tttgaagttggtcctgtttgtttccttggctaa
DBGET
integrated database retrieval system
