Mirounga leonina (Southern elephant seal): 118021852
Help
Entry
118021852 CDS
T07472
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118021852 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlx03019
]
118021852 (PARN)
Enzymes [BR:
mlx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
118021852 (PARN)
Messenger RNA biogenesis [BR:
mlx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
118021852 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
T6PP_C
Motif
Other DBs
NCBI-GeneID:
118021852
NCBI-ProteinID:
XP_034878200
LinkDB
All DBs
Position
Unknown
AA seq
647 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDHTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREHYDEKRLQSNGAGTLSYVSPNTSKCPVTIPEDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVDTLETEKKERYIV
ISKVDEEERKRREQQKLAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
CCPLPVDLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKV
ESAEGFPSYDTATEQLHEAGYDAYITGLCFISMANYLGSFLSPPKIHVSARSKLVEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVQIAVNTSKYAESYRIQTYAEYVGKKHKEKQIKRKWTEDTWQEVERKRLN
TQCISYALQNHYYHTNSLTVTSAAGKRNLSPSPAEADLEARISGDISDPELEQTESCAEP
LSEGRKKAKKLKRMKKDLSPAGLYKILVEFWSCVLFNALEAHSWGEK
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagtgatggaccttcagtc
actgcattgacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgaccacacagat
tcaaagtatataacaaagtcatttaacttctatgtgttcccgaaacccttcaatagatcc
tcaccagatgtcaagtttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagttttccgcaatggaatcccatatttaaatcaggaagaagaaaga
caattaagagagcattatgatgaaaaacgtctgcagtccaatggcgcaggaactctgtct
tatgtatcaccaaacacttccaaatgtcctgtgacaattcctgaggaccagaagaagttt
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactaatttatcagactttgagctggaag
tatcccaaaggcattcacgttgacactttagaaactgaaaagaaagagcgctacatcgtc
atcagcaaagtagatgaagaagagcgtaagaggagggagcagcagaaacttgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgccaattcg
ggaaaactcgttattggacacaacatgctcttggatgtcatgcacactgttcatcagttc
tgctgccctctgcctgtggacctaaatgagtttaaggagatgacgacatgtgttttcccc
agactcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagacacctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacggctactgaacagctccacgaggcgggc
tatgatgcttatatcacagggctgtgcttcatctccatggcgaactacctaggttctttt
cttagccctccaaaaattcatgtgtctgccagatcaaaactcgttgaacctttttttaac
aagttatttcttatgagagtcatggatattccctatctaaacttggaaggaccagacttg
caaccaaaacgcgatcatgttctccatgtgactttccccaaagagtggaaaaccagcgac
ctttaccagctttttagtgcctttggtaacattcagatatcctggattgatgacacatca
gcatttgtttctctcagccagcccgaacaagtgcagattgctgtcaataccagcaaatat
gcagaaagctatcggatccagacctatgccgaatatgtggggaaaaaacacaaggagaag
cagatcaagagaaaatggacagaagatacttggcaggaggttgagagaaaacggttaaac
actcagtgcatatcctatgctctgcagaatcactactaccacaccaatagtcttacagtg
accagtgcggcaggaaagagaaacctgagtcccagcccagcagaagctgacttggaggcc
agaatatcgggggatatttctgaccctgagctcgaacagacggagtcctgtgcagaaccc
ctctccgagggaaggaaaaaggccaagaaattaaaaagaatgaagaaggacctttcacca
gcaggtttgtataagatcttagtagagttctggagttgtgtactctttaatgctttagaa
gctcatagttggggggagaagtga
DBGET
integrated database retrieval system
