Mirounga leonina (Southern elephant seal): 118024616
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Entry
118024616 CDS
T07472
Symbol
LIG3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
118024616 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mlx03400
]
118024616 (LIG3)
Enzymes [BR:
mlx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
118024616 (LIG3)
DNA repair and recombination proteins [BR:
mlx03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
118024616 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
Synaptonemal_3
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
118024616
NCBI-ProteinID:
XP_034882458
LinkDB
All DBs
Position
Unknown
AA seq
1070 aa
AA seq
DB search
MDYVHFVYIFREFRAHLPPALPWTHFNFPSHPVSCMTLTFKILFPPTLRTLGRKEFCLFR
QQHHWPDRRQFSHWSETDLLHGHCLLQRRKPALSFQEGHLRPRATCLVFLPGAHVGLCSG
PCEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIGKVVPNPFSESGGDMKEWYHIKCMF
EKLERARATTKKIEDLTELEGWEELEDNEKEQISQHIADLSSKATGTPKKKAVVQAKLTA
TGQVASPVKGASLVTSSNPRKFSGFSAKPNNSGGAHTSPPPKASLSSSRCDPKHKDCLFR
EFRKLCAMVAENPSYNTKTQIIQDFLRKGSAGDGFHGDVYLTVKLLLPGVIKSVYNLNDK
QIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQSKSFPPAAKSLLTIQEVDEFLLQL
SRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDLKMNSGAKHVLDALDPNAYEAFKAS
RNLQDVVERVLRNEQEVEKEPGRRRALSVQASLMTPVQPMLAEACKSIEHAMKKCPNGMF
SEIKYDGERVQVHKKGDHFSYFSRSLKPVLPHKVAHFKDYIPQAFAGGHSMILDSEVLLI
DTKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEI
PNRIMFSEMKQVTKAADLADMINRVIREGLEGLVLKDVKGTYEPGKRHWLKVKKDYLNEG
AMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSSQKWCTVTKCSGGHDDATLARLQKE
LDMVKISKDPGKIPGWLKVNKIYYPDFIVPDPKKAAVWEITGAEFSKSEAHTADGISIRF
PRCTRIRDDKDWKSATNLPQLKELYQLSKERADFTVAAREEGSSTTGGSSGENGGTSGPA
GARKASRASPKQPSTGARKAGGRLSGPSSRGGQQLTLKAGQKRKAPEETPCPAKVLLDIF
TGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDTASATHVLGSGDKNPEAQQVSPEWIWG
VGPGLKGGNQDQVGKRVLYKEKGGYWSYSSGGYRTPGGSASPKSGNETGL
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atggattatgtgcattttgtatacattttcagggagttcagagcccacctccccccagcc
cttccatggactcattttaattttcccagtcatcccgtgagctgtatgactttgactttc
aagatcctcttcccaccaaccctccgcacacttgggcgaaaagaattttgcctattccga
cagcaacatcactggcctgacagaagacagttcagccattggtcagaaacagatctgctt
catgggcactgcctcctccagagaagaaagcctgctctgtcattccaggaaggccatcta
agaccacgtgccacctgccttgttttcttgccaggggcgcatgtgggactctgcagtggc
ccctgtgagatggccgagcaacgattctgtgtggactatgctaagcgcggcacggcgggc
tgcaagaagtgcaaggaaaagattgtgaagggggtgtgccggatcggcaaagtggtgccc
aaccccttttcagagtccgggggtgatatgaaagagtggtatcacattaaatgcatgttt
gagaaactggagcgggcccgggctaccacaaaaaaaatcgaggacctcacagagctagaa
ggctgggaagagctggaagacaatgagaaggaacagataagccagcacattgcagatctg
tcttctaaggcaacgggcacaccaaagaagaaagccgtcgtccaggctaagctgacagcc
actggccaggtggcctctccagtgaaaggtgcctcacttgtcaccagtagcaatccccgg
aaattttctggtttttcagccaagcccaacaactctgggggagcccatacaagccctccc
cctaaggcaagtctgtcctcaagcagatgtgaccccaagcacaaggattgtctgtttcgc
gagtttcggaagttgtgtgccatggtggctgagaatcctagctacaacacgaagacccag
atcatccaggactttcttcggaaaggttcagcaggagatggtttccacggcgacgtgtac
ctgacagtgaagttgctgctgccaggtgttattaagagtgtttacaacttgaatgataag
cagatcgtgaagcttttcagccgcattttcaactgcaacccagatgatatggcacgagac
ctagagcagggcgacgtgtcagagacaatcagagtcttctttgagcagagcaagtctttc
cccccagctgccaagagcctccttactatccaggaggtggacgaattcctccttcagctc
tccaggctcaccaaggaggatgagcagcaacaggctctgcaggacatcgcctccaggtgt
acagccaatgacctcaagtgcatcatcaggttgatcaaacatgatctgaagatgaactca
ggtgcaaagcacgtgttagatgcccttgaccccaatgcctatgaagccttcaaagcctca
cgcaacctgcaggacgtggtggagcgggtcctccgcaatgagcaggaggtggagaaggag
ccaggccggagacgagctctgagcgtccaggcttccctgatgacgccagtgcagcccatg
ctggccgaggcctgcaagtccatcgagcacgcaatgaagaagtgtcctaacggcatgttc
tctgagatcaagtacgatggggagcgagtgcaggtgcataagaagggggaccacttcagc
tacttcagccgcagcctcaagcctgtcctgcctcacaaggtggcccatttcaaggactac
atcccccaggctttcgccgggggccacagcatgatcttggactctgaggtgctcctgatt
gacacgaagacaggcaaaccgctgccctttgggactctgggagtgcacaagaaagctgcc
ttccaggatgctaatgtttgcctatttgtttttgattgtatctacttcaatgatgtcagc
ttgatggacaggcctttgtgtgagcggcggaagtttcttcatgataacatggttgaaatt
cccaaccggatcatgttctcagaaatgaagcaagtcactaaagctgcggacttggccgac
atgataaaccgggtcatccgagaggggctggaagggctggtgctgaaggacgtgaagggt
acatatgagcctggaaagcggcactggctgaaggtgaaaaaagactatttgaacgagggg
gccatggcggacacagctgacctggtggtccttggggccttctatgggcaagggagcaaa
ggtggcatgatgtccatcttcctcatgggctgctatgacccaagcagccagaagtggtgc
acagtcaccaagtgttcgggaggccacgatgatgcgacccttgcccgcctgcagaaggaa
ctggacatggtgaagatcagcaaggatcccggcaagatacccggctggctgaaagtcaac
aagatctactatcctgacttcatagtcccagacccaaagaaagctgccgtgtgggagatc
acgggggccgagttctccaagtctgaggcgcacacggccgacgggatctccatccgcttc
ccacgttgcacccgcatccgtgatgataaggactggaagtctgccactaacctcccccag
ctcaaggaactgtaccagctgtccaaggagagggctgacttcaccgtggcggcccgagag
gaggggagctccaccaccgggggcagcagcggagagaacgggggtacctcggggcctgcg
ggggctcgcaaggcctccagggcctccccgaagcagccctccaccggcgccaggaaggca
ggagggaggctgagtggccccagcagcagaggcggccagcagctgaccttgaaggcaggc
cagaagcggaaggcccccgaggagaccccgtgcccagccaaggtgctgctggacatcttc
actggggtccggctctacctgcccccctccacaccagacttcagccgcctcagacgctac
ttcgtggcattcgacggggacctggtgcaggagtttgacacggcctcagccacacacgtg
ctgggtagtggggacaagaaccctgaggcccagcaggtctccccggagtggatttggggt
gtgggtcccggtttgaagggagggaaccaggatcaggtaggaaaacgggtcctttataaa
gaaaagggaggttattggagctactcctctgggggatacaggactccaggaggctctgcc
tcccccaaatctggaaacgagactggtctttaa
DBGET
integrated database retrieval system
