Mirounga leonina (Southern elephant seal): 118025749
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Entry
118025749 CDS
T07472
Symbol
PDCD11
Name
(RefSeq) protein RRP5 homolog isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
mlx
Mirounga leonina (Southern elephant seal)
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mlx03009
]
118025749 (PDCD11)
Ribosome biogenesis [BR:
mlx03009
]
Eukaryotic type
90S particles
Other 90S particles
118025749 (PDCD11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_C
OB_RRP5
OB_RRP5_4th
Suf
TPR_14
TPR_19
ARM_TT21
TPR_CcmH_CycH
NRDE-2
TPR_15
ARM_TT21_5th
UTP6_C
DUF7017
DUF2110
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
118025749
NCBI-ProteinID:
XP_034884300
LinkDB
All DBs
Position
Unknown
AA seq
1870 aa
AA seq
DB search
MEESFPRGGTRRTHKSEKALQQSVEQDNLFDISTEEESTKRKKSQKGPAKIKKLKTEKRE
SKSIREKFEILNIESLCEGMRILGCVKEVNELELVISLPNGLRGFVQVTEICDAYTKKLS
EQVAQEEPLKDLVSLPELFSPGMLVRCVVSSVGITERGKKSVKLSLNPKNVNKVLSAEAL
KPGMLLTGTVSSLEDHGYLVDIGVCGARAFLPLQKAQEYIRQKNKGATLKVGQYLNCIIE
EMKGNGGVVGLSIGHSDVSTAIATEEQNWTLNNLLPGLVVKAQVQKVTPVGLTLNFLSFF
TGLVDLMHLDPKKAGTYFSNQTVRACVLSVHPRTRAVRLSLRPVFLQPGRSLTRLSCQHL
GAVLDEVPVQSFFSKAGATFRLKDGALAYARLSHLSDSKNIFNAEAFKPGNTHKCRIIDY
SQMDELALLSLRTSIIEAQYLRYHDIKPGALVKGTVLTIKPYGMLVKVGEQIKGLIPPMH
LADILMKNPEKKYHIGNEVKCRVLLCDPEAKKLMMTLKKTLIESNLPAITCYADAKPGLQ
THGFILRVKDYGCIVKFYNDVQGLVPKHELSAEYVPDPERVFYAGQVVKVVVLNCEPSKE
RMLLSFKLLGDRKKEPPGHSQKKRRTVSLGQLVDVKVLEKTKDGLEVAVLPHNIPAFLPT
PHLSDHVANGPLLYHWLQAGDALHRVLCLSQSEGRVLLCRKPALVSTVEGGQDPKSFAEI
HPGMLLIGFVKSIKDYGVFVQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTTV
DEEKQRMLLSLRLSDCCLGDVATTSLLLLSQCLEERQGVRSLMSNRDSVLIQTLAEMTPG
MVLDLEVQEVLEDGSVVFSEGPVPGLVLRASRYHRAGQEVEPGQKKKVVILNVDMLKLEV
HVSLCHDLVNRKAKKLKKGSEYQAIVQHLEESFAVASLVETGHLAAFSLTSHLNDTFRFD
SEKLQVGQGVSLTLKTTEPGVTGFLLAVEGPAAKRTVRQTRKDSETVDEDEEADPALVVG
TIKKHTLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDEVPEGTSPTAKLKVGK
TVTARVIGGRDMKTFKFLPISHPRFIRTIPELSVRPSELEKDGRTALNTHSVSPLEKIKQ
YQAGQTLVCFLKKYNVVKKWLEVEIAPDIRGRIPLLLTSLSFKVLKHPDKKFRIGQALKA
TVVGPDSSKAFLCLSLIGPHKLEKGEVAMGRVVKVTPKEGLTVSFPFGKIGRVSVFHVSD
SYTETPLEDFIPQKVVRCYVLSTTGHVLTLSLRSSRTNPETKSKITDPEINSIQDIQEGQ
LLRGYVKSVQPHGVLFGLGPSVVGLARYLHVSQYSPSKKALYNRYLPEGKLLTAKVLSLN
HQKNLVELSFLPGDTGKPDVFPASLGLPLLKQEEREVEAEEKECKGEEEKEKKNQKRKGK
RNQEGQEEVQLPGKEKSEPQKPQAKKQGKRRRRESASEQERVDKKQKKAAPSEEDDSGVE
VYYREGEDEVEEMSVLPKEKPTRPAEVPRLQLSSGFVWDVGLDSLTLALPPRGESSDSEE
DDKPQQSTQKKSRKERMLEKQKAEKELSRMEEALMDPGRQPESAHDFDRLLLSSPNSSIL
WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVF
ERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQA
GASHRVMQRALECLPNKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPRRTDVWSVY
IDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKAKALEY
VEAKSSVLED
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaagcttcccccgagggggtacgagaaggacccacaaatcagagaaagctttg
cagcagtcagttgaacaagacaacttatttgatatttctactgaagaggaatccaccaaa
aggaaaaagagccagaaagggccagcaaaaataaaaaagttgaaaaccgaaaagagagaa
agcaagtctataagagagaagtttgaaatccttaatattgagtccctttgtgaggggatg
cggatcttgggttgtgtgaaggaggtaaatgaactggaactggtgattagtctccccaat
ggactccggggctttgtgcaagtaactgaaatttgtgatgcctataccaaaaagctgagt
gagcaggtggctcaagaagaacctctgaaggacctggtcagcttgcctgaactcttctca
cctgggatgctggtgagatgtgtggtgagcagtgtgggtatcacagagaggggcaaaaag
agtgtcaagttatctctgaaccccaaaaatgtcaacaaagtgctaagtgctgaggccctg
aagcctggcatgctgctcacaggcactgtgtccagcctggaagaccatggctacctagtg
gacattggtgtttgtggggccagagcctttctgccactgcagaaagcccaggagtatatc
cgacagaagaacaaaggtgctacactgaaggtgggtcagtacctgaactgcatcattgaa
gagatgaaaggcaatggaggagttgttggtttgtctattggtcattctgatgtttctact
gccattgctactgaggagcaaaactggacccttaataacttgctaccaggactggtggtc
aaagcccaggtacagaaggtgactccagttggccttaccctaaacttcctctcattcttc
actggcctggtcgacttaatgcacctggatcccaagaaagctggaacatatttctcaaat
caaacagtaagggcctgtgttctctctgtccatcctcggaccagggctgtgcggctgagc
ctgcgtcccgtcttcctgcagccagggcgctcactcactcggctctcttgccagcacctg
ggagctgtgctggatgaggttcctgtccagagctttttcagcaaggccggggccaccttc
aggctgaaggatggggcgctggcctatgcccggctcagccatctctccgattctaagaac
atcttcaatgctgaggccttcaagccggggaacactcacaagtgtagaatcatcgattac
agccaaatggatgagctggccttgctctctctgaggacgtccattattgaagctcagtac
cttagatatcatgacatcaaacctggggcattggtaaagggcacagtgctgaccataaag
ccatacgggatgctggtgaaggtgggcgagcaaatcaagggcttgatacctcccatgcac
ctggccgacatcctgatgaagaatccagagaagaagtaccacattgggaatgaggtcaag
tgccgggttttgctttgtgatcctgaagccaaaaagctgatgatgaccctgaagaaaacc
ctaattgagtctaatctgcctgccattacctgctatgccgatgccaagcctggtctgcag
acacatggcttcatcctcagggtcaaggactatggctgcattgtgaagttctacaacgat
gtgcagggactggtgcctaagcatgagctcagtgccgagtatgtccctgacccagagagg
gtcttttatgctggccaggtggtgaaggttgtggtgctgaactgtgagccatccaaagag
aggatgcttttgtccttcaagctgttgggtgatcgaaagaaagagcctccgggacacagt
cagaagaaaagaaggactgttagtcttggacagttggtggatgtgaaggttttagagaag
accaaagatgggctggaggtggctgtcctgccccacaacatccctgctttcctccccaca
cctcatctgtcggaccacgttgccaatggccctctgttgtatcactggctccaggctggt
gacgcccttcacagagtactttgtctgagccagagtgagggacgtgtcctcctttgtagg
aagccagctttggtgtccactgtggagggtggccaggatcctaagagcttcgcagaaatc
catcctgggatgctgctcatcggttttgtgaagagcatcaaggactacggtgtgttcgtc
cagttcccgtcaggtcttagtggactggcccccaaagctatcatgagtgacaagtttgtg
acttccacaagtgaccactttgtcgaggggcagacggtggttgcaaaggtgaccaccgtg
gacgaggagaagcagcgcatgctgctgtcgctgcggctgtcggactgctgtctgggggac
gtggctaccaccagcctcctcctcctgagccagtgcctggaagagcggcagggtgtacgc
agcctcatgagcaaccgagactctgtgttgatccagacgttggctgagatgacccctggg
atggtccttgacctagaggtgcaggaggtgttggaggatggctctgtggtgttcagtgag
ggccctgtgcctggcctggtcctgagggccagcagatatcatcgggcagggcaagaggtg
gaacctgggcagaaaaagaaggttgtcatcttaaatgttgatatgttgaagttggaggta
catgtttccctttgccatgacttggtgaatagaaaagctaaaaagctgaagaaaggcagc
gagtaccaggcgattgtgcaacacttggaggagtcctttgctgtcgcctccttggtagag
actggccacctggcagctttctccctgacctctcacctcaatgacaccttccgctttgac
tcagagaagttgcaggtgggacagggtgtctccctaaccctcaagaccacagaaccagga
gtgactggttttcttttggctgttgaggggccagctgctaagaggactgtgagacagacc
cggaaggactctgagacagtcgatgaggacgaggaagcagatccagctctggttgtgggg
actataaagaagcacaccctgtccattggggacatggtcacgggcactgtcaagtccatt
aagcccacccatgtggttgtaaccctggaagatggcatcattggctgtattcacgcctcc
cacattctagatgaagttccagagggcacatctcctactgccaagctgaaagttgggaag
acagtcactgcccgagtgattggtggtcgcgacatgaagaccttcaaatttcttccaata
agtcatcctagatttattcgaaccattccggagctgagtgtccggccaagtgagctggag
aaggatggccgcactgctctcaacactcactctgttagccccttggagaagattaaacag
taccaggctggacagactttggtttgcttcttgaagaagtacaatgtggttaagaaatgg
cttgaggtggagattgctccagacatccggggcaggattcccttgttgctcacttctctc
agcttcaaggttctgaaacatccagataagaagttccggattggccaggccctgaaggct
actgtggttggcccagattcttccaaggccttcttgtgtctctcacttataggtcctcac
aagcttgagaagggggaagtggccatgggccgagtggtgaaggtgactcctaaggagggg
ctgactgtctccttcccctttgggaagatcggaagagtcagcgtatttcacgtgagtgac
tcctacacagagacgcccttggaagacttcatcccccagaaggttgtcaggtgttacgtc
ctgtctactacaggccacgtattgactctgtcactgcgatcgtccaggacaaacccagag
acgaagagcaaaataaccgatcctgagattaactccatccaggacattcaggaagggcaa
ctcctgaggggctatgtgaagtctgtccagccgcatggcgtgctctttggtcttggcccc
tccgttgtgggtttggcccgatatctgcatgtctcccagtacagtccatccaagaaagcc
ctttacaacagatacctcccagaagggaagctgctcacagccaaggtcctgagcctgaac
caccaaaagaacctggtagagctgtcgttcctccccggtgacaccgggaagccggacgtg
tttcctgcctccctagggctgccgcttctaaagcaagaggagagggaagtggaggcagaa
gagaaagagtgcaaaggagaagaagagaaggagaagaagaatcagaaaaggaaagggaag
aggaaccaggaggggcaggaggaggtgcagctgcctggcaaggagaagagtgagccccag
aaaccgcaagcaaagaagcagggcaagcggcggcgccgggagtctgcaagcgaacaggag
agagtggacaagaagcagaagaaagctgctccgtcagaggaggacgacagtggtgttgaa
gtatattatcgggaaggggaagacgaggtagaagagatgagtgtgttgcccaaggagaag
ccgaccaggccagcagaagtgccccggctacagctgtcctccggtttcgtttgggacgta
gggctagactctctgaccctggccttaccacctcgaggcgagagctcagacagcgaggag
gacgacaagcctcagcagtccacgcagaagaaaagcaggaaggaaaggatgctggagaag
cagaaggcagagaaagagctgtcccgcatggaggaggcgctgatggatcctgggcgacag
ccagagtcagcacatgattttgaccgactcttgctgagctcccccaacagctccatcctg
tggctgcagtacatggccttccacctgcaggccacggaaatcgagaaggcccgggccgtg
gcggagagggctctcaagaccatttccttcagagaggagcaagagaagctgaacgtgtgg
gtggcactgctgaatctagagaacatgtacggctctcaggagtcactgaccaaggtcttt
gagcgggccgtgcagtacaatgagcctctcaaggtctttctccatctggctgacatctat
accaagtccgagaaattccaggaagctggtgaactttacaaccggatgctgaagcgattc
aggcaggagaaagctgtctggatcaaatatggcgcttttcttctacggaggggccaggct
ggggccagtcaccgtgtgatgcagcgagctctcgagtgtctgcccaataaagagcatgtg
gatgtgattgccaagtttgcccagctggagtttcagctgggggatgcggaacgggccaag
gccatttttgagaacacactgagcacctacccaaggcgcactgatgtctggtcggtctac
atagacatgaccattaagcatggcagccagaaggaagtccgggacatctttgaacgggtc
attcatctcagcctggcccccaagcgaatgaaattcttcttcaagcgctacctggactat
gagaaacaacatggcactgagaaggacgtgcaggcagtgaaggcgaaggccctggaatac
gtggaagcgaagagctccgtgttggaggactag
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integrated database retrieval system
