Mirounga leonina (Southern elephant seal): 118026938
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Entry
118026938 CDS
T07472
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04151
PI3K-Akt signaling pathway
mlx04510
Focal adhesion
mlx04512
ECM-receptor interaction
mlx04820
Cytoskeleton in muscle cells
mlx04974
Protein digestion and absorption
mlx05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
118026938 (COL6A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118026938 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118026938 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118026938 (COL6A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118026938 (COL6A1)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
118026938 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlx04147
]
118026938 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118026938 (COL6A1)
Exosome [BR:
mlx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118026938 (COL6A1)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118026938 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
118026938 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
118026938
NCBI-ProteinID:
XP_034885912
LinkDB
All DBs
Position
Unknown
AA seq
1027 aa
AA seq
DB search
MKVARALLPLLLQACWAAAQDVPGNARAAAFQDCPVDLFFVLDTSESVALRLKPYGALVD
KVKAFTKSFIDNLRDRYYRCDRSLVWNAGALHYSDEVEIISPLRPMPGDRDALKASVDAV
KYFGKGTYTDCAIKKGLEELLVGGSHLKENKYLIVVTDGHPLEGYKEPCGGLEDAVNEAK
HLGVKVFSVAITPDHLEPRLSIIATDHMYRRNFTAADWGQNRDAEEIITQTIDTIIDMIK
NNVEQVCCSFECQPARGPPGPRGDPGYEGERGKPGLPGEKGEAGDPGRPGDLGPIGYQGM
KGEKGSRGEKGSRGAKGYKGEKGKRGIDGVDGMKGEMGYPGLPGCKGSPGFDGALGPPGP
KGDAGAFGQKGEKGAPGADGEPGRPGNTGPPGDEGEPGLPGPPGEKGEAGDEGNPGPDGA
PGERGGPGERGPRGTPGVRGPRGDPGEAGAQGDQGREGPVGVPGDPGEAGPAGPKGYRGD
EGPPGPEGSRGAPGPAGPPGDPGLMGERGEDGPPGNGTEGFPGFPGYPGSRGPPGINGTK
GYPGLKGDEGEAGDPGEDNNDVSPPGVKGAKGYRGPEGPQGPPGHTGPPGPDECEILDII
MKMCSCCECKCGPIDILFVLDSSESIGLQNFEIAKDFVIRVLDRLSRDELVKFAPGQSHA
GVVQYSHNQMQEHVDLRDPSIRTVQELKEAIRKMRWMAGGTFTGEALHYTRNRLLPPTQN
NRVALVITDGRSDTQRDTTPLSVLCGPDIQVVSVGIKDMFGYVAGSDQLNVISCQGLASP
GRPGISLVKENYAELLEDNFLKNVTAQICIDKKCPDYTCPITFPSPADITILLDGSASVG
SHNFDTTKRFAKRLAERFLTAGRTSPSHEVRVAVVQYSGPGQQRPGRGSLQFLQNYTVLA
STVDGMDFFNDATDVNDALSYVTRFYREASPREAKKKLVLFSDGNSQGATAAAIEKVVQE
AQRADIEIFVVVVGRQVNEPHIRVLVTGKTAEYDVAFGERHLFRVPSYQALLRGVFYQTV
SRKVALG
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atgaaggtggcccgcgctctgctccccctgctgctgcaggcttgctgggccgccgctcag
gatgtcccgggcaacgccagggccgcagccttccaggactgccctgtggacctcttcttc
gtgctggacacctccgagagcgtggccttgcggctgaagccctacggagccctggtggac
aaggtcaaggccttcaccaagagcttcatcgacaacctgagagacaggtactaccgctgt
gaccgtagcctggtgtggaacgcgggcgccctacactacagcgacgaggtggagatcatc
agcccgctcaggcccatgccgggcgatcgcgacgccctcaaggccagcgtggatgcggtc
aagtacttcggcaagggtacctacacggactgcgccatcaagaaggggctggaggagctc
ctcgtggggggctcccacctgaaggagaacaagtacctgattgtggtgaccgatgggcac
cccctggagggctacaaggagccgtgtgggggcctggaggacgccgtgaacgaggccaag
cacctgggcgtcaaagtcttctcggtggccatcacacccgaccacctggagccgcgtctg
agcatcatcgccacagaccacatgtaccgacgaaacttcacagcggctgactgggggcag
aaccgcgacgccgaggagatcatcacccagaccatcgacaccatcatcgacatgatcaaa
aacaatgtggaacaagtgtgctgctccttcgaatgccagcctgccaggggacctcccggg
ccacggggagaccccgggtacgagggagaacgtgggaagccaggtctcccaggagagaaa
ggagaagccggagaccccggaaggcccggggacctcggacccatcggctaccaggggatg
aagggagaaaaagggagccgaggggagaagggctccaggggagccaagggctacaagggc
gagaagggcaagcgtggcatcgatggtgtggacggcatgaaaggggagatggggtacccc
ggcctgccaggctgcaagggctcgcccggattcgacggcgctctaggacccccggggccc
aaaggcgacgcaggtgccttcggacagaaaggagagaaaggtgcccctggagctgacggg
gaacctgggaggccagggaacacaggcccccctggagacgagggtgagccgggcttgcct
ggtcccccaggagagaagggagaagccggtgacgagggaaacccaggaccagatggtgca
cctggcgagaggggcggccctggggaaagaggaccacgggggaccccaggtgtgcggggc
ccacggggagacccgggcgaagctggagcccaaggtgaccagggacgagaaggccccgtc
ggtgtccccggagacccgggcgaggctggccccgctggacctaaaggttaccgaggtgac
gaggggcccccggggcctgagggttccagaggagctccagggcccgcaggaccccctgga
gaccccggcctgatgggtgaaaggggggaagacggcccacccggaaacggcaccgagggc
ttccctggcttccctggctacccaggcagcaggggcccccccgggataaatggcactaaa
ggctacccaggcctcaagggggatgagggagaagccggagaccctggagaggacaacaac
gacgtctcacccccaggcgtcaaaggagcaaaggggtaccggggccccgaaggcccccag
ggacccccaggacacacaggaccgccgggaccagatgaatgtgagatcttggacatcatc
atgaaaatgtgctcttgctgtgagtgcaagtgtggacccatcgacatcctcttcgtgctg
gacagctcggagagcatcggcctgcagaacttcgagatcgccaaggacttcgtcatcagg
gtcctggatcggctgagcagggacgagctggtcaagttcgcacccgggcagtcccacgcc
ggagtggtgcagtacagtcacaaccagatgcaggagcacgtggacctgagggaccccagc
atcaggaccgtccaggagctcaaggaagccatcaggaagatgcggtggatggcgggcggc
acgttcacgggggaggctctgcactacacccggaaccggctgctgccgcccacccagaac
aacagggttgcgctcgtcataacggacggccgctcggacacccagagggacaccaccccg
ctcagcgtgctctgcggcccggacatccaggtggtctctgtgggcatcaaggacatgttc
ggctacgtcgccggctccgaccagctcaacgtcatctcctgccaaggcctggcatctccg
ggccggccaggcatctcgctggtcaaggagaactatgcggagctgctggaggacaacttc
ctgaagaacgtcaccgcccagatctgtatagacaagaaatgtccagattacacctgccca
atcacgttcccctccccggccgacatcaccatcctgctggacggctcggccagcgtgggc
agccacaacttcgacaccaccaagcgcttcgccaagcggctggccgagcgcttcctgacg
gcgggcaggacgagcccgtcccacgaggtgcgcgtggctgtggtgcagtacagcggtccc
gggcagcagcggccggggcgcgggtccctgcagttcctgcagaactacaccgtgctggcc
agcaccgtggacggcatggacttcttcaacgacgccaccgacgtcaacgatgccctcagc
tacgtgacgcgcttctaccgtgaggcctcgccccgcgaagccaagaagaagctggtgctc
ttctccgacggcaactcgcagggggccacggcggcggccatcgagaaggtggtgcaggag
gcccagcgggcggacatcgagatctttgtggtggtggtgggccgccaggtgaacgagccc
cacatccgcgtcctggtcacgggcaagacggccgagtatgacgtggcttttggcgagcgc
cacctgttccgtgtgcccagctaccaggccctgctgcgcggcgtcttctaccagaccgtg
tccagaaaggtggcgctgggctag
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integrated database retrieval system
