Mirounga leonina (Southern elephant seal): 118026942
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Entry
118026942 CDS
T07472
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
mlx
Mirounga leonina (Southern elephant seal)
Pathway
mlx04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mlx00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
118026942 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mlx04147
]
118026942 (COL18A1)
00535 Proteoglycans [BR:
mlx00535
]
118026942 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
mlx00536
]
118026942 (COL18A1)
Exosome [BR:
mlx04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118026942 (COL18A1)
Proteoglycans [BR:
mlx00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
118026942 (COL18A1)
Glycosaminoglycan binding proteins [BR:
mlx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118026942 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
118026942
NCBI-ProteinID:
XP_034885921
LinkDB
All DBs
Position
Unknown
AA seq
1721 aa
AA seq
DB search
MARLPGSRLGPPLLLLLVTYCLAAAHADLLSLNWLWSTRTDGPTAELVSEPPGSPHGQPR
EDTSTHAAPQHGPTEQGRGPASPELPVERPETGLGGASPAGPDTKEENIAGVGAKILNVA
QGIRSFVQLWDDATPTTSPPRTEAPAPVTLTAPLTLPGPSSPPQENGTALWLGSGAPSSP
DTQRTEAGTPPVPTQLPPFPGRPSPPPPAAGRASPSSAPGGDPPWGSRQSPGRPQDPDSG
GLLRVAAGAGQQHRPPGIHRRTPPQLPLVTGPLGALAGRSARSSDPRTLVSQIPLSAVPG
DGGTRAPHVANSVGPGLANRSALLGADPLTPTGQPVPAAAGRCLPLPPSLPVCSHLGIGR
AWLPNHLQHRSSEEVWAAARAWGHLLQTHCHRFLAWFFCLLLAPPCGAGPPPTPPPCRQF
CEALEDACWGHLDGSGLPVSCASLPAQEDGLCVFIGPGAESLGTEVGLLQLLGEPPPPQV
TQVDDPDIGPAFVFGPDANSGQVARYHFPSPFFHDFSLHFHVQPATEDAGVLFAITDAAQ
AVVSVGVRLSGVRDGHQHIQLLYTEPGATRTHTAASFRLPAFTGQWTRFALSVDGATVAL
FVDCELFQRVPLVRSLRGLELEPGAGLFVAQAGGADPDKFQGMIAELRVRGDPHVSPLHC
LEEDDEDSGGVSGDFGSGLEETREPLREQSGPSPKPSLPEAPPVTSPPLAAGRDVEDSRT
EEIEEETTVSSLGARTLPGLDAVTIESVRSVGGGLEEGHAVQSPDARPIPGPQGPPGPPG
PPGKDGAPGRDGEPGDPGEDGRPGDPGPQGFPGTPGDAGPKGEKGDPGVGPRGPPGPQGP
PGPPGPSFRHDKLTFIDMEGSGFGGDLESLRGPRGFPGPPGPPGVPGLPGEPGRFGMNSS
DVPGPAGLPGVPGRDGPPGLPGTPGPPGPPGKDGGPGKMGQKGSPGEVGAPGPKGRQGDP
GPVGAPGENGLAGAPGPAGPPGPPGPPGPPGPGLAAGFDDMEGSGRPFWSTAQGASGSQG
PPGPPGVKGDPGITGPPGAKGEVGADGPPGFPGLPGREGSAGAQGPKGEKGTQGEKGDPG
RDGVGQPGLPGPPGPPGPVVYMSEQDRVLGGVPGPEGRPGFAGFPGPAGPKGDLGSKGQR
GLPGPKGEKGEPGPVFSPDGSLLAPAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGR
PGMNGLKGEKGEPGHSSIGFGMRGPPGPPGPPGPPGPPGTPIYDSNAFMESGHPGPPGLP
GLQGPSGPKGDKGDVGPPGPPGQFPFDLLQLGTEMKGEKGDRGDTGQKGERGEPGGGGFF
GSSVPGPPGPPGYPGIPGPKGESIRGQPGPPGPQGPPGIGHEGRQGPPGPPGPPGPPGPP
SFPGPYRQTISVPGPPGPPGPPGPPGTMGTSSGVRIWATYQTMLDKVPEVPEGWLIFVAE
REELYVRVRNGLRKVLLEARTPLPRGTDNEVAALQPPVGNPYPRRELTHSTARPWRADDI
LANPPRLLDPQPYPGAPQHGSYLHFQPARPTGRPTHTHTHQDYHPVLHLVALNSPQPGGM
RGIRGADFQCFQQARAVGLAGTFRAFLSSRLQDLYSIVRRADRTSVPIVNLRDEVLFPSW
EALFSGSEGQLKPGARIFSFDGRDVLQHPAWPQKSVWHGSDPSGRRLTDSYCETWRTEAA
AATGQASSLLAGRLLAQKAASCHNAFIVLCIENSFMTSFSK
NT seq
5166 nt
NT seq
+upstream
nt +downstream
nt
atggctcggctccccggcagccgcctgggccccccgctgctgcttctcctggtcacatat
tgcctcgcggccgcccatgctgacctgctgagcctaaactggctgtggtccactaggacc
gacgggcccacagccgaactggtctctgagcccccggggagcccacatgggcagcccaga
gaggacaccagcacacacgcggccccccagcatggccccacggagcaggggagaggccct
gccagcccggagctccccgtggagaggccagagactggcctgggcggtgcctcccccgcg
ggcccggacacgaaggaggagaacatcgccggcgtgggagccaagatcctgaatgtggct
cagggcatccggagctttgtccagctgtgggatgacgccactcccaccacgagccccccc
cggacagaggcgccagcccctgtgaccctcacggcccccctcaccctccccgggccctcc
agccccccccaggagaacgggaccgctctctggctgggcagtggggccccgagctctccg
gacacccagaggaccgaggccggcaccccaccagtgcccacccagctgccgcccttcccg
ggcaggccctcgccaccaccacctgctgcaggtagagcttctccgtcctctgcgccaggt
ggggaccctccctgggggagccggcagtccccggggcggccccaggatccggacagcgga
ggactcctgcgcgtggcagccggtgccggccagcagcaccgaccccctggcatccacaga
cgcacgcctcctcagctccccctggtgacgggccccctgggcgctctcgccggccgctcc
gctcgctcctccgacccccgcaccctggtgtctcagatcccgctctcggctgtccctggg
gacgggggcactcgggctcctcacgtggctaactctgtggggcctggtcttgctaaccgc
tctgcactgctcggggcggacccgctgacccccaccgggcagcctgtccccgccgccgcc
ggccgctgcctgcccctgcctccctccctgcccgtctgcagccacctgggcattgggcgc
gcctggctgcccaaccacctgcagcacaggagcagcgaggaggtgtgggccgccgcccgg
gcgtgggggcacctcctccagacgcactgtcaccgcttcctcgcctggttcttctgcctg
ctgctggccccgccctgtggtgctggccctccgcccacgcctccgccctgccgccagttc
tgtgaggccctggaggacgcgtgctggggccacctggacgggagcgggctgccggtctcc
tgcgcctcgctcccggcccaggaggacggcctctgcgtgttcattgggccgggtgcagaa
agcctgggcacggaggtggggctcctgcagctgcttggagagcccccacccccgcaggtc
acgcaggtggacgaccccgacatcgggccagccttcgtctttggcccggatgccaacagc
ggccaggtggcccggtaccacttccccagcccgttcttccatgacttctcgctgcacttc
cacgtccagcctgccaccgaggacgcgggggtgctgtttgccatcacggacgcggcccag
gcggtggtgtccgtgggcgtgaggctgtcgggcgtgcgtgatgggcaccagcacatccag
ctcctgtacaccgagcctggtgccacgcggacccacacggccgccagcttccgtctgcct
gccttcaccggccagtggacgcgcttcgccctcagcgtggacggcgcgaccgtggcgctg
tttgtggactgcgagttgttccagagggtgcccttggtgcgctccctgcggggcctggag
ctggagcctggcgccggcctcttcgtggcccaggccggaggagcagatcctgacaagttc
caggggatgatcgcggagctgagggtgcgcggggacccccacgtgagccccctgcactgt
ctggaggaggacgatgaggacagtggcggggtgtctggagacttcgggagcgggctggag
gagacccgggagcctctcagggagcagtcgggtccatcgcccaaacccagcctccccgag
gctcccccggtcacttctccgcccttggctgcaggcagggatgtggaagactccagaact
gaagaaattgaggaagaaaccacggtgtcttccttgggagctcggaccctccccggcttg
gatgcggtcaccatagagagtgttcggagcgttggcggcggcctggaagagggtcatgca
gtgcagagtcccgatgcacggcctatacccgggccgcagggcccccctggccccccaggg
cctccagggaaggatggtgcccccggaagggacggtgagccgggggatcccggtgaagat
gggagaccgggcgaccctgggccgcagggcttccccgggaccccgggagatgcgggcccc
aagggcgagaagggggaccctggggttgggccaagaggacccccaggaccccaagggcct
ccagggccaccaggaccctccttcagacatgacaagctgaccttcattgacatggagggg
tccgggttcggcggtgacctggagagcctccgaggccccagaggcttccccggcccccca
ggacccccaggcgtcccaggcctgcctggagagccaggccgctttgggatgaacagctca
gacgtcccaggacccgcaggccttcctggtgtgcctgggcgggacgggccccctgggctt
cctggcaccccgggtccgccgggtcctccaggaaaagacggaggaccagggaagatgggc
cagaaaggcagccccggtgaagtgggcgccccaggacctaagggaaggcagggtgaccct
gggcctgttggcgctcctggggagaatggcttggcaggagcccctggaccagccggccca
ccagggccccccgggccccccgggccaccaggaccaggacttgctgcggggtttgatgac
atggaaggctccgggagacccttctggtcaacggctcaaggagccagtgggtcgcaggga
ccgcccggcccgcctggggtcaagggggatcctggaataaccggaccaccgggcgccaag
ggagaagtcggggccgacggacctcccgggttccccggcctccctggcagagagggctcg
gccggagcccagggacccaaaggagaaaaagggacccagggagagaaaggcgacccaggg
agggacggagtggggcagcctggcctccccggaccccccggacccccggggcctgtcgtc
tacatgtcggagcaggatagagtgctgggaggcgtgccgggacccgagggccggccgggg
ttcgcgggctttcctggaccagccgggccaaagggagatctgggctccaaaggccagagg
ggcctcccgggacccaagggtgagaagggtgagccgggcccggtgttcagccccgatggc
agcttgctggcccccgcccagaaaggggccaagggagagcctggcttccgaggacccccg
ggcccctacggacggccggggcacaagggagagattggcttccctgggcggccgggtcgc
cccgggatgaacggattgaagggggagaaaggggagccgggacacagcagcattggcttt
ggcatgagaggtccacccggtcccccagggcctccggggcccccaggccctcctgggact
cccatctatgacagcaacgcctttatggagtctggccaccctggacccccaggattacca
gggctccaggggccttctggacccaagggtgacaaaggagatgtgggccctccaggacca
ccagggcagttcccattcgacctcctccagctggggactgaaatgaagggggagaagggt
gaccgaggggacaccgggcagaagggtgaacggggtgagcccgggggtggcggattcttc
ggctcaagtgtgcccggcccccccggcccgccaggctaccctgggattccgggtcccaag
ggagagagcattcggggccagcctggcccacctggacctcagggaccccctggcatcggc
catgaggggcgtcagggacctcctgggccccctggaccccctggtcccccagggccccct
tcctttcctggcccttacaggcaaaccatcagtgttcccggccccccaggcccacctggg
ccccctgggccccctggaaccatgggcacctcctctggggtgaggatctgggccacgtac
cagaccatgctggacaaagtgccggaggtgccggagggctggctcatcttcgtggctgag
agggaggagctgtatgtccgggtccgcaacgggctccggaaggtcctgctggaggcacgg
acgccgctcccacgcgggacggacaacgaggtggccgccttgcagccccccgtgggcaac
ccgtacccccggcgggagctcacccactccacggcgcggccctggcgggcagatgacatc
ctggccaaccccccacgtctgctggacccccagccctaccctggagccccacagcacggc
tcctacctgcacttccagccggctcgccccactggcaggcccacccacacccacacccac
caggactaccaccctgtgctgcacctggtggcactgaacagcccccagccgggcggcatg
cgaggcatccgcggggcggacttccagtgcttccagcaggcccgcgccgtggggctggcc
ggcaccttccgcgccttcctgtcctctcggctgcaggacctctacagcatcgtgcgccgg
gccgaccgcacaagcgtgcccatcgttaacctcagggacgaggtgctgtttcccagctgg
gaggccttattctcgggctccgagggccagctgaagcccggggcccgcatcttctctttc
gacggcagagatgtcctgcagcaccccgcctggccccagaagagcgtgtggcacggctca
gaccccagtgggcgccggctgacagacagctactgcgagacgtggcggacggaggctgcg
gcagccacgggccaggcgtcctcgctgctggccggccggctgctggcgcagaaagccgcg
agctgccacaacgccttcattgtgctctgcatcgagaacagcttcatgacctccttctcc
aagtag
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