Micrococcus lylae: CJ228_002840
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Entry
CJ228_002840 CDS
T09111
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mly
Micrococcus lylae
Pathway
mly03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mly00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ228_002840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mly03019
]
CJ228_002840
03009 Ribosome biogenesis [BR:
mly03009
]
CJ228_002840
Enzymes [BR:
mly01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CJ228_002840
Messenger RNA biogenesis [BR:
mly03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CJ228_002840
Ribosome biogenesis [BR:
mly03009
]
Prokaryotic type
rRNA processing factors
CJ228_002840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
DUF5351
Motif
Other DBs
NCBI-ProteinID:
WIK82763
LinkDB
All DBs
Position
630388..633447
Genome browser
AA seq
1019 aa
AA seq
DB search
MAAENTPETTTAEPAETTAETAIAPKAAETTAEQAATADVDAAAGAGTDAAGDPAEAEAE
QPAAAQTFTFDPSDPFAVPADLIPTLTASEPRRGDRDEEKDEAGRDDHDDQDDDESPESG
RGRRRRRGRGRGSRTDHGGPGADADGEDVESEDSGEENRDEERETGTTSRRRRKRRRGSV
DMELDGGEEGDPENTVTRVRAPRQASVKATDAVQSVKGSTRLEAKRQRRRDSRAGGRRRQ
VITEAEFLARRESVDRKMLVRQRDKRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQ
NVLPSMEAAFVDIGRGRNAVLYAGEVDWTAADLDGKPKKIENALKSGDSVLVQVTKDPVG
HKGARLTSQVSLPGRYLVYVPGGSMTGISRKLPDVERSRLKKILKDHLPQDAGVIVRTAA
EGTSEQELQNDINRLRAQWEGIQEKAKGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAML
VQGQETWDNIEAYVMYVAPHLLDRLHHWVPEDHEGEDLYTTHRIDEQLHKALERKVYLPS
GGSLVFDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVID
FIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEQ
CAGRGILIQDEPVDRHRSHNSHGEPRGEGDGRRRRKRRGGSGGQQHDGDAAQKDTAGSAD
AEVSEEEKQRQERAAAARAALQSIAKASGKSVDDGTASAAEDTAASTEPATASAGSDGPD
ASDGQDGSGQEQSSGRSRRKRRGKRRRGRGGEGRGGEGRSEGRDQEQDDSESDGRDRADT
GRQDAERKDAEPKAEGRDDAVQQRAGQGEAAQAGPTDDAVITFDGEPVSVPRRRGGRRAA
TEEGAKDLSALEDALEQKSASRRRSEPNETKSTSADARDAADDRSAADGREQPAPRRRSR
RAVSSGSAGSAVSTVEDQKASGGATFTATAGAPAKKEQATSAPVMLGVGVKAEDIVRHR
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgagaacacccccgagaccaccacggcggaacccgccgagaccaccgcggag
acggcgatcgcgccgaaggcagcggagaccacggccgagcaggccgccaccgcggatgtg
gacgcggcggcgggcgcgggcaccgacgccgccggtgaccccgccgaggccgaggccgag
cagcccgccgccgcccagaccttcaccttcgacccgtcggacccgttcgccgtgccggcg
gacctgatcccgaccctcaccgcctcggagcctcgccgcggcgaccgcgacgaggagaag
gacgaagcggggcgtgacgaccacgacgaccaggacgacgacgagtcgccggagtccgga
cgcggccgccgccgtcgccggggccggggccgtggctcccgcacggaccacggcgggccc
ggcgccgacgccgacggcgaggacgtcgagtccgaggactccggcgaggagaaccgggac
gaggagcgtgagacgggcaccacctcgcgccgtcgtcgcaagcgtcgccgcggatcggtg
gacatggagctggacggaggagaggagggagacccggagaacacggtgacccgtgtccgc
gccccgcgccaggcctccgtgaaggccacggacgccgtgcagagcgtcaagggctccacc
cgcctggaggccaagcgccagcgccgccgcgactcccgcgccgggggccgccgccgtcag
gtcatcaccgaggccgagttccttgcccgtcgcgagtccgtggaccgcaagatgctggtc
cgtcagcgggacaagcgcatccagatcgccgtgctggaggacggtgtgctcgccgagcac
ttcgtctcccacaccacgcaggactcgatgatcggcaacgtgtacctgggcaaggtccag
aacgtgctgccgtccatggaggccgccttcgtggacatcggccgcggccgcaacgccgtg
ctctatgccggcgaggtcgactggaccgccgccgacctggacggcaagccgaagaagatc
gagaacgccctgaagtccggtgactcggtgctcgtgcaggtcaccaaggacccggtgggc
cacaagggcgcccgtctgaccagccaggtctccctgcccggccgctacctcgtgtacgtg
cccggcggctcgatgaccggcatctcccgcaagctcccggacgtggagcgttcccgcctg
aagaagatcctcaaggaccacctgccgcaggacgccggcgtgatcgtccgcaccgcggcc
gagggcacctcggagcaggagctgcagaacgacatcaaccgcctgcgcgcccagtgggag
ggcatccaggagaaggccaagggcaccaaggtgctggccccggagctgctgtacgcggaa
ccggacctgaccatcaagaccgtccgcgacgtcttcaacgaggacttctccgcgatgctc
gtgcagggtcaggagacctgggacaacatcgaggcctacgtgatgtacgtggccccgcac
ctgctggaccgtctgcaccactgggtgccggaggaccacgagggcgaggacctctacacc
acccaccgcatcgacgagcagctccacaaggcgctcgagcgcaaggtgtacctgccctcc
ggcggatcgctcgtgttcgaccgcaccgaggccatgaccgtggtggatgtgaacaccggc
aagttcaccggctccggcggcaacctcgaggagaccgtcaccaagaacaacctggaggcc
gctgaggagatcgtccgccagctgcgcctgcgggacatcggcggcatcatcgtcatcgac
ttcatcgacatggtgctcgagtccaaccgggacctggtgctgcgtcgtctggtcgagtgc
ctcggccgggaccgcaccaagcaccaggtggccgaggtgacctcgctgggcctggtgcag
atgacgcgcaagcgcatgggcaccggcctcgtcgaggtgttctcggagacctgtgagcag
tgcgccggacgcggcatcctgatccaggacgagcctgtggaccgccaccgctcccacaac
tcccacggcgagccgcggggcgagggcgacggccgtcgtcgccggaagaggcgaggcggc
agcggcggacagcagcacgacggcgacgccgctcagaaggacaccgcaggttccgccgat
gccgaggtctccgaggaggagaagcagcgtcaggagcgggccgccgccgcgcgggccgcg
ctccagtccatcgccaaggcctccggcaagtccgtcgacgacggcaccgcctccgcagcg
gaggacaccgccgcctcgaccgagcccgccaccgcgtcggccggttctgacggaccggat
gcttccgacggacaggacggttccggacaggagcagtcctccggccgttcgcgccgcaag
cggcgcggcaaacgccgccgcggccgcggcggcgagggccgtggcggtgagggccgcagc
gagggccgggaccaggagcaggacgactccgagtccgacggccgcgatcgcgcggacacc
ggccgccaggacgcggagcgcaaggacgccgaaccgaaggccgagggccgcgacgatgcc
gtgcagcagcgcgccgggcagggcgaggccgcccaggccggtccgacggacgacgccgtg
atcaccttcgacggcgagccggtctccgtgccgcgccgtcgcggcgggcgccgtgccgcg
acggaggagggcgccaaggacctctccgccctcgaggacgccctcgagcagaagtcggcc
tcgcgccgccgttccgagccgaatgagacgaagtccacatccgccgacgcccgggatgcg
gccgacgaccggtccgcggcggacggccgggagcagccggcgccgcgtcgtcgttcccgc
agggccgtctcgtccggctctgccggctccgcggtgagcaccgtcgaggaccagaaggcc
tccggcggcgccaccttcaccgccaccgccggcgccccggcgaagaaggagcaggccacc
tccgccccggtgatgctgggcgtgggcgtcaaggcggaggacatcgtccgccaccgctga
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