Microbacterium lushaniae: F6J85_11740
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Entry
F6J85_11740 CDS
T07230
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
mlz
Microbacterium lushaniae
Brite
KEGG Orthology (KO) [BR:
mlz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mlz03019
]
F6J85_11740 (hrpA)
Enzymes [BR:
mlz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F6J85_11740 (hrpA)
Messenger RNA biogenesis [BR:
mlz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F6J85_11740 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
T2SSE
nSTAND3
ResIII
AAA_30
UvrD-helicase
SLFN-g3_helicase
NACHT
SRP54
FtsK_SpoIIIE
Zeta_toxin
TsaE
AAA_23
PhoH
Motif
Other DBs
NCBI-ProteinID:
QEW03695
UniProt:
A0A5J6L5P5
LinkDB
All DBs
Position
2450986..2454912
Genome browser
AA seq
1308 aa
AA seq
DB search
MSAPEPVIAYPPELPVSAAREEIARAIAENQVVIVAGATGSGKTTQLPKICLELGRTSIA
HTQPRRIAARTIAERIAEEMQVPLGTTVGYKVRFTDNVSADTRVALVTDGILLNEIHRDR
LLRRYDTIIIDEAHERSLNIDFLLGYLRRILPERPELKVIVTSATIDPQSFAKHFADAAD
RPAPIVEVSGRTYPVDIRYRPLVPDGAADDDADEVGGIVAALRELDREPPGDVLVFLPGE
AEIRDAADAVRGAYAKDAAPTEVLPLYGRLSSAEQHRVFEPSRVAGVRRRIILATNVAET
SLTVPGIRYVVDTGTARISRYSARSKIQRLPIEAVSQASAQQRSGRAGRTAPGVAIRLYS
EEDFTRRPEYTEPEVLRTSLASVLLQMLALGFGDIAAFPFLTKPDSRGVKAAGDLLTELG
AITVPGGRSGDNPRLTKIGREIARLPIDPRFARMLLEARENGTLGEVLPIVAGLSIQDVR
ERPEERREEADRLHARFADPTSDFLTLLNLWNHLQEKQAELGSSAFRRLCRSEFLNYVRV
REWVDVHRQLRSVLGGPRSSREAGPDGHEAGDAIHRAILAGLLSQIGILDPRTANPPKDR
RTPKAPADGRPAKGEYIGARGARFAIFPGSGLRKKRPHAVMAAELVETSRLFARTVAAID
PAWAEELAGDLAKRSLSEPHWSKSAGAASAYEKITLFGVEIVPRRRVQLARFDRPLAREM
FLRHALVEDEWDAAALDKRLTAFLRRNAEQRRRLEKIEERERRRDILVGDEAVFAFYDAR
VPADVFDVRSFERWWREAAARTPHLLDLTEADLTGDAARADDRGFPSRWRQGDQTLSLSY
RFEPGAPDDGLTVLVPLALLAQLRPDGFDWQVPGLRDQLVTALLRALPKAIRRNVVPAAD
WAERFSAELVGRGPEDTDGLPATSLVEALAAQVQRVANQPVRASDFDLERVPGHLLPTFR
AVDARGRTAGSDRDLAALQARLADRARSSVAATIERSTARVAAATAPGSAAAFPARAGVT
GWDFGDLPDVVDTRVAGGVVRGYPAVVDDGASVSLRLETTPADAVRLTRAGVRRLLLLAV
ASPAAYVLEHLTSTEKLALAASPYPNAKALIEDARVAVADAVLEREAPAGVRTRAAFEAV
RDRLSAVVVDDTFAAVSLAARVLSAAREVDRALKGQSSMALLGALGDVRAQLGGLVFPGF
VSAIGLTRLAHVPRYLAGALERLQTLPDNPGRDRQRQNEYERAAALYAEAGGTIPPAPGT
PAGLVHARWLLEELRVSLFAQRLGTAEAVSPQRIAKALREAGAPAARG
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgcgcccgaacccgtcatcgcctacccgccggagctgcccgtcagcgccgcccgg
gaggagatcgcgcgcgccatcgccgagaaccaggtcgtgatcgtggccggcgccaccggc
tcgggcaagacgacgcagctgccgaagatctgcctcgagctcggccgcaccagcatcgcc
cacacccagccccgccggatcgccgcgcgcacgatcgccgaacgcatcgcggaagagatg
caggtgccgctgggcaccacggtcggctacaaggtgcgcttcaccgacaacgtctccgcc
gacacccgcgtcgcgctcgtgaccgacggcatcctgctcaacgagatccaccgcgaccgg
ctgctgcgccgctacgacacgatcatcatcgacgaggcccacgagcggtcgctgaacatc
gacttcctcctcggctacctccgccgcatcctgcccgagcggccggagctgaaggtcatc
gtgacgtcggcgacgatcgacccgcagagcttcgcgaagcacttcgcggatgcggcggat
cgcccggcgccgatcgtggaggtgtccggccgcacctacccggtcgacatccgctaccgc
ccgctcgtgcccgacggcgcggccgacgacgacgcggacgaggtgggcggcatcgtcgcg
gcgctgcgcgaactcgaccgcgagccgccgggcgacgtgctcgtcttcctccccggcgag
gcggagatccgcgatgccgccgacgccgtgcgcggcgcgtatgcgaaggatgccgcgccc
accgaggtgctccccctctacggacgcctgtcctcggccgaacagcaccgcgtgttcgag
ccgtcccgcgtggcgggcgtgcgacggcggatcatcctggccaccaacgtcgccgagacg
agtctgaccgtccccggcatccgctacgtcgtcgacaccgggaccgcgcgcatctcgcgc
tacagcgcgcgctcgaagatccagcgcctgccgatcgaggcggtgtcgcaggcctccgcg
cagcagcgctcgggccgtgcgggccgcacggccccgggcgtggccatccgcctctactcc
gaggaggacttcacccgccggccggagtacaccgagcccgaggtcctgcgcacgtcgctg
gcgtcggtgctgctgcagatgctcgccctcgggttcggcgacattgcggcgttccccttc
ctcaccaagcccgattcgcgcggcgtcaaggcggccggcgacctgctcaccgagctcggc
gccatcaccgtgccgggcggacgcagcggcgacaaccccaggctcacgaagatcggccgc
gagatcgcgcgcctgccgatcgacccccgtttcgcgcggatgctgctggaggcccgcgag
aacggcacgctcggcgaggtgctgcccatcgtggcgggtctgtccatccaggacgtccgc
gaacgacccgaggagcgccgcgaggaggccgaccgcctgcacgcgcggttcgccgatccc
acgagcgacttcctcacgctgctgaacctgtggaaccacctgcaggagaagcaggccgag
ctcggctccagcgccttccggcggctgtgccgcagcgagttcctcaactacgtccgggtg
cgggagtgggtggacgtgcaccggcagctgcgctccgtgctcggcggtccgcgctcctcg
cgggaggccggccccgacgggcatgaggcgggagacgccatccaccgggcgatcctggcc
ggcctgctgtcgcagatcggcatcctcgacccgcgcaccgcgaacccgccgaaagaccgc
cgtacgcccaaggcgcccgccgacgggcgccccgccaagggcgagtacatcggagcgcgc
ggcgcgcgcttcgcgatcttccccggttcgggcctgcgcaagaagcggccgcacgcggtg
atggccgccgagctggtggagacctcacggctgttcgcccgcaccgtcgccgcgatcgat
ccggcgtgggcggaggagctcgccggcgacctcgcgaagcgctcgctgagcgaaccgcac
tggtccaagagcgccggtgccgcatcggcgtacgagaagatcacgctgttcggcgtggag
atcgtgccgcgccgccgcgtgcagctggcccgcttcgaccggccgctcgcgcgcgagatg
ttcctgcgccacgcgctcgtcgaggacgaatgggatgcggcggccctggacaagcggctc
acggcgttcctgcgccgcaacgccgagcagcgccggcggctggagaagatcgaagagcgc
gagcggcgccgcgacatcctcgtcggggacgaggcggtgttcgcgttctacgacgcccgc
gtccccgccgacgtgttcgacgtgcgctcgttcgaacggtggtggcgcgaggccgcggca
cgcacgccgcacctgctcgacctcaccgaggccgacctcaccggtgacgccgcgcgcgcc
gacgaccggggcttcccctcacggtggcggcagggcgatcagacgctgtcgctgtcgtac
cgcttcgaacccggcgcccccgacgacggcctcacggtgctcgtgccgctggccctcctc
gcccagctgcggccggacgggttcgactggcaggtgccgggtctgcgcgaccagctcgtg
actgcgctgctgcgcgccctcccgaaggcgatccgccgcaacgtcgtccccgccgccgac
tgggccgagcggttctcggcggagctcgtcggccggggccccgaagacaccgacgggctg
ccggcgacgagcctcgtcgaagccctcgccgcgcaggtgcagcgggtcgcgaatcagccg
gtgcgcgcatccgacttcgacctcgagcgcgtgcccgggcacctcctgccgaccttccgc
gccgtcgacgcgcgcggacgcaccgccggcagcgaccgtgacctggccgccctgcaggcg
cgcctggcggaccgcgcgcgctcgagcgtcgccgcgacgatcgagcggagcacggcgcgg
gtcgcggcggcgacggctcccgggtcagccgccgcgttccccgcgcgcgccggcgtcacc
ggctgggatttcggcgacctgcccgacgtcgtagacaccagggtggcgggcggcgtcgtg
cgcggctaccccgccgtcgtcgacgacggcgcgagcgtgtcgctgcggctggagaccacg
cccgcggatgcggtgcgcctcactcgtgcgggcgtgcgtcgcctgctcctcctggccgtc
gcctcccccgccgcgtacgtgctcgagcacctcacctcgacggagaagctcgccctcgcc
gcatccccgtaccccaacgccaaggcgctcatcgaagacgcgcgcgtcgccgtggccgat
gcggtgctggagcgggaggcgcccgcgggcgtgcgcacgcgcgcggcgttcgaggcggtg
cgcgaccgcctgtcggccgtcgtcgtggacgacaccttcgcggcggtgtcgctggcggcc
cgagtgctctcggccgcgcgggaggtcgaccgcgcgctcaaggggcagagctccatggcg
ctcctgggcgcgctgggggacgtgcgggcgcaactgggcggcctcgtcttccccgggttc
gtctcggccatcggcctcacgcgcctggcgcacgtgccgcggtacctcgcgggggcgctc
gagcgcttgcagaccctccccgacaacccggggcgcgaccggcagcggcagaacgagtac
gaacgagccgccgccctgtacgccgaagcgggcgggacgatcccgcccgcccccggcacc
cccgccggcctcgtgcacgcccggtggctgctggaggagctgcgcgtgagcctgttcgcg
cagcgcctgggcaccgccgaggcggtctcgccgcagcgcatcgcgaaggcgctgcgcgag
gcgggcgccccggccgcccgcgggtag
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