Methanosarcina mazei Go1: MM_0213
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Entry
MM_0213 CDS
T00082
Symbol
recJ
Name
(GenBank) putative single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03410
Base excision repair
mma03430
Mismatch repair
mma03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MM_0213 (recJ)
03430 Mismatch repair
MM_0213 (recJ)
03440 Homologous recombination
MM_0213 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mma03400
]
MM_0213 (recJ)
DNA repair and recombination proteins [BR:
mma03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MM_0213 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MM_0213 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MM_0213 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
AAM29909
UniProt:
Q8Q0C4
LinkDB
All DBs
Position
complement(288722..290059)
Genome browser
AA seq
445 aa
AA seq
DB search
MSELEKLINLAKNAADKIRRHKFVRVISHNDADGLTSAGIMAHALLRAGIPFQLSIASKL
DGAVIEEVNRSISSGELVIFCDMGSGHPELIKQVGADVVIIDHHQPVGQSPAKAVVNAHM
VGIDGATDISASGTCYLVARELGTGNIDLAGLAIAGAVGDRQLFRTANAFILEEALKSGV
VSIRKGLKVGDGNLADVLAYSKEPFLDVTGYPEKAAEFLNQLGLSGNIEDLSEEETSKLA
SAVALKLVKQASPEAIEAVIGEVFLLNRELVHNVYDFISILNTCGKQKVYGLALALCLKD
ATILDEAFSLTKDHEKNLAIDIRKNVENIRKGENLWYISTVEAISTGDLATTVVRYLHPE
LPFICVNESEGILKVSARGTRELVSKGLDLAFTLREAAGAAGGNGGGHSVASGASIPLGS
TEEFLSIADRIIGEQLRKNASGKVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgagcttgaaaaactgataaatcttgcaaaaaatgcagccgataaaatacgcagg
cataaatttgtgcgcgtgatttcacataacgatgctgacgggctaacttcagccggaata
atggcccacgcccttttgagggctggcatcccttttcagctttcaatagccagcaagctg
gacggggctgtaattgaagaagtgaacaggagcatctcttcaggagaacttgtcattttc
tgtgatatgggcagcgggcatccagaacttattaaacaagtgggcgcggatgttgttata
attgaccaccaccagccagtagggcagtcccccgcaaaagctgtggtaaacgcacatatg
gtaggaatagacggggcaacggatatctcggcttcaggaacctgttatcttgtagctcgg
gaactcgggacaggaaacatcgaccttgcagggctcgcaattgcaggggcagttggagac
aggcagcttttccggactgcaaatgctttcatcctggaagaagccttaaaatcaggggtt
gtttccatcagaaaagggttaaaagtcggggatggaaatcttgcagacgtgctcgcatac
agcaaagagccttttctagatgtaaccggttacccggaaaaagcggcggaattcttaaat
cagcttgggctttccggaaacattgaagatctttccgaagaagagacctcaaaacttgcc
agtgctgttgccctgaaacttgtcaaacaggcaagccctgaagcaattgaagcggttatc
ggggaagttttcctgctcaaccgggaacttgtccacaatgtttatgatttcatttccata
ctcaatacctgcgggaagcaaaaggtttacgggcttgccctcgctctctgcctgaaagac
gcaactatccttgatgaagccttttcccttacaaaggatcatgaaaagaatcttgccatc
gatatccggaaaaatgtggaaaatattcgcaaaggggaaaacctctggtatatcagcacg
gttgaagccatctcgacaggggaccttgcaacaaccgtagtcagatacctccatcccgag
cttccttttatctgtgtaaacgaatctgaaggtattttaaaggtttctgcccgaggtact
cgtgaactcgtttcaaaagggcttgaccttgcctttaccctcagggaagctgctggtgct
gcaggcggaaacggaggagggcacagtgttgcatccggagcttcaatacccttgggaagt
acggaggagttcctgagcattgcagaccgtataatcggggagcagctcaggaaaaacgcc
agtgggaaagtaaaatga
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