Methanosarcina mazei Go1: MM_0747
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Entry
MM_0747 CDS
T00082
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM_0747
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mma03019
]
MM_0747
03009 Ribosome biogenesis [BR:
mma03009
]
MM_0747
Enzymes [BR:
mma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM_0747
Messenger RNA biogenesis [BR:
mma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM_0747
Ribosome biogenesis [BR:
mma03009
]
Prokaryotic type
rRNA helicases
MM_0747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AAM30443
UniProt:
Q8PYV4
LinkDB
All DBs
Position
895027..896790
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AA seq
587 aa
AA seq
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MEKLAKFKALGLSDSTLKALKKKGFEEPTPIQEKVIPLFLKGEADIIGQAQTGTGKTTAF
GAPIIEKIPEKSGHVQAIILTPTRELAIQVSEELNSIKGDKKLYIVPIYGGQSMTQQLRV
LKSGVDIVVGTPGRVIDHLERKSLNLEHIAYFVLDEADEMLNMGFIDDIKEILKSTGPNK
RMLFFSATMPKAILGIVKKHMQNYEHITIEKEELTETLTEQIYFEVKESDKFEALCRIID
IEDEFYGLVFCRTKTDTSQLAQKLSDRGYLADALHGDLSQQEREKILNKFRKQKINILAA
TDVAARGIDIMDLTHVINYALPQDPESYVHRIGRTGRAGKQGTAITFVTSTEFRRLTYIK
KTSKSEMKKGHIPEIKDVIKAKRARVRTELEETIKTEEYGDCLEMSQKLLEEYPAEKILA
ALLKFTFKDKFDESMYTEISSGSSYVDRKGKSRLFIAMGKADGMTPDKLSYFIQEELGDG
ELKVRDAEIFPHFSFVTLPFAQAETLIEIFKNKRRGSKPFVELAQKSRGRSSKDSGETRS
DNRGTSRGNSRNGESRGDSRGESRGTKSTNYSRSTRSTRSTKKKDSY
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattagcaaaatttaaggcacttgggctctcggacagtacattgaaagccctc
aaaaagaaaggtttcgaagaaccaaccccgattcaggaaaaagtcattccgctttttttg
aaaggagaagcagacattatagggcaggcccagacaggaacaggaaaaacgacagccttc
ggagcccccatcatagagaaaattcctgagaaatcaggacacgttcaggcaataatcctg
acccctacaagggaactcgcaattcaggtttcagaagaacttaactccataaaaggagac
aagaaactatacattgtccctatatatggaggacagtccatgacccagcagcttcgcgtg
ctgaagagcggcgtggacattgttgtaggaactcctggaagggtcatcgaccacctcgaa
agaaagagcctcaacctcgaacatatcgcatatttcgttcttgacgaagccgatgaaatg
ctgaacatgggctttattgacgacataaaagagatcttaaaatcaaccggcccgaataag
aggatgcttttcttttcagccacaatgccaaaggcaattcttggaatcgtcaagaagcat
atgcagaactatgagcacattacaatcgaaaaagaggaacttacagaaaccctgaccgaa
cagatctattttgaggtcaaggaaagcgacaagttcgaagctctctgcaggattatcgac
attgaagacgaattctacgggctcgtgttctgccggacaaaaactgacacaagccagctt
gcccagaaactcagcgacaggggttatttagccgatgccctgcacggagacctttcccag
caggagagagaaaagatccttaacaagttcaggaagcagaagataaacatccttgcagca
accgacgtcgccgcaagaggcatcgacattatggacctgacccacgtcatcaactatgcc
ctgccccaggacccggagtcctatgtgcacaggataggaaggacaggaagggcaggcaag
cagggaactgccattacttttgtcacatccacggaattcagaaggcttacttacattaaa
aagacttcaaagtccgaaatgaagaaaggccacattcccgaaataaaagatgtaattaaa
gccaaaagggccagagtaagaacagaactcgaagagaccataaagacggaagagtacggg
gactgccttgagatgagccagaagctccttgaagaataccctgcagaaaaaattctggct
gcccttttgaagttcaccttcaaagacaagttcgatgaaagcatgtacactgaaatctcc
agcggcagctcctatgtcgacaggaaaggcaaatccaggctcttcatagctatgggtaaa
gcagacggcatgactccggacaaattgtcgtatttcattcaggaagaactcggggacggc
gaactcaaagtaagggatgcagaaattttcccgcatttctcctttgtaactctgccattt
gctcaggctgaaaccctgatcgaaatattcaaaaacaaaaggagaggaagcaaacccttc
gtggaactcgcccagaaatccaggggaagaagctcaaaggattcaggggagaccagaagc
gataatcgaggcacttctagaggcaattccagaaacggtgaatccagaggggattctaga
ggcgaatctcgcggcacaaaaagcacaaattactcaagaagtaccagaagtacaagaagc
acgaaaaagaaagactcttattaa
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