Methanosarcina mazei Go1: MM_1538
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Entry
MM_1538 CDS
T00082
Name
(GenBank) Replication factor C subunit
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mma
Methanosarcina mazei Go1
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mma03016
]
MM_1538
Enzymes [BR:
mma01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MM_1538
Transfer RNA biogenesis [BR:
mma03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MM_1538
Prokaryotic type
tRNA splicing ligases
MM_1538
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AAM31234
UniProt:
Q8PWN8
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All DBs
Position
1836245..1837747
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AA seq
500 aa
AA seq
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MVESENKDIEESGAEVDRRDVRSLVRKLSDNNWEIPKGHIPNMRVPGRLFVSEKLLEGIE
PGTIDQIANVATLPGIQKYSMAMPDAHLGYGFAIGGVAAFDVEEGVISPGGVGFDINCGV
RLIRTNLQKEDVVPHIKRLTDELFSNVPSGVGSKSRFKASDKELDSAFLEGAKWAVDAGY
GVEADVEHCEGNGFLEGADTSHVSSKARNRGKPQLGTLGSGNHFLEVQYVDEIYDPEVAS
AFGLEEGQVTVMVHCGSRGAGHQICTDHLKELSQAVKRYGIEIPDKQLACAPAQSKEAQN
YFKAMLCAANYAWANRQMITHWTRESFEKIFGRDADDMEMSLLYDVAHNVAKLEEHSIEG
RKKEVYVHRKGATRAFPAGHPEVPSAYRDVGQPVLIPGSMGTPSFILCGSTESMDVSFGS
ACHGAGRVMSRAHAKKEFHGQSIKEDLEAHGITVRATHPSVIAEEAPGVYKSSSEVVNVV
HELGIARKVARVIPLGVAKG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggttgagagtgaaaataaagatatagaagaatcgggtgctgaagttgataggagggat
gtcagaagcctggtccggaaactttccgataataactgggaaattccaaaagggcacatt
cctaatatgagagttccaggacgcctttttgtatctgaaaaattgcttgaaggcattgaa
ccaggtacaattgaccagatcgcaaacgtggcaacacttccgggaatccagaaatattcc
atggcaatgcctgatgcccacctgggatatggatttgctatagggggcgttgcagccttt
gacgtcgaagaaggagttatcagcccgggaggagtgggttttgatattaactgcggtgta
cggcttatccgcacaaaccttcaaaaggaagatgtcgtccctcatataaagaggctgaca
gatgagctgtttagtaatgtgccttctggtgtgggttcaaaaagccgtttcaaggcttct
gataaagagctggacagcgcatttcttgaaggtgcaaaatgggcagtagacgctggttat
ggggtggaagccgatgttgaacattgtgaggggaatggtttccttgaaggagcagatact
tctcatgtgagttcaaaggcgagaaaccgtggaaaaccccagttagggaccctcgggagc
ggcaaccatttcctcgaagtacagtatgtagatgagatctatgacccggaagtggcttca
gccttcgggcttgaagaaggccaggtcacggttatggttcactgcgggtcaaggggggca
gggcaccagatatgtaccgaccaccttaaagaactctcccaggctgtgaagagatatgga
attgagattccggacaaacagcttgcctgtgctccggctcagtcaaaagaggcacagaat
tatttcaaagccatgctctgtgctgcaaattatgcatgggcaaacaggcagatgattacc
cactggacaagagagtcttttgaaaaaatctttggcagggatgccgatgacatggaaatg
agcctcctgtatgatgttgcccataatgtggcaaaactggaagaacacagcattgaaggc
aggaaaaaagaggtttacgtacacagaaaaggggcaacaagagcctttcccgcagggcat
ccggaagttccttccgcatacagggatgtggggcagcctgttttaatccccggaagcatg
gggactccttcattcatactctgcggttcaacggaatctatggacgtttctttcggtagt
gcctgccacggagccgggagagttatgagcagggcgcatgcaaagaaggaattccacggg
cagagcataaaagaggaccttgaagctcatggaatcactgtaagggcaactcatccctcc
gtgattgccgaagaagctcccggtgtgtataagtccagcagtgaagtggtaaatgtcgtg
catgaacttggtattgcccgcaaggtagcaagagttatcccgctcggggttgcaaaaggt
taa
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