Methanosarcina mazei Go1: MM_1879
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Entry
MM_1879 CDS
T00082
Name
(GenBank) putative RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM_1879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mma03019
]
MM_1879
Messenger RNA biogenesis [BR:
mma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MM_1879
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MM_1879
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
EXOSC1
ECR1_N_2
HypA
S1_RRP5
OB_RRP5_4th
zf-C3HC4_3
Motif
Other DBs
NCBI-ProteinID:
AAM31575
UniProt:
Q8PVT1
LinkDB
All DBs
Position
2233429..2234379
Genome browser
AA seq
316 aa
AA seq
DB search
MIRIRKNKTTRKKLTGPGEGKNGAEKSAPSNEESRDQFKGQQKDQPRTQFKSQPREQSRD
QFKGQPRAQYKSQPRDQSRGQFRDQSRDQFKGSPDKKRKFPYSKKGPRDRKETPGFRPPT
AEAVVSEEDLEKGGFVLPGELVGTTEEFKSGNGTAVIAGDIYSTATGNVLIDRKARVVSV
KPNTITPNILKVGDVVYGRISDVRESGAMVEVAGIEGKENREIVSVRTGDIHVSSVRDSY
VKRLADEFRPSDIVRAKVVDVERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCN
MTETRKISTEYGKGIR
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atgattagaattcgaaaaaataagactaccaggaaaaaattaacaggtcctggtgaagga
aagaacggagctgagaaatcggctccttcaaatgaagaaagcagggatcaatttaagggt
cagcaaaaggatcagcccaggactcaatttaaaagccagcccagggagcagtcaagagac
cagtttaaaggtcagccccgagctcagtataagtctcagcccagagaccagtccagaggg
caattcagagaccagtcaagggaccagttcaaaggcagccctgataaaaagagaaaattc
ccatattccaagaaaggtcccagagatagaaaggaaactccgggtttcaggccccctacc
gcagaagccgttgtatctgaagaagatctcgaaaaaggaggctttgtacttcctggagaa
cttgtcggaactacagaagagttcaaatcgggcaatggaactgcagtaattgcaggagac
atctattccactgctacgggtaatgtgctcattgacagaaaagccagagtggtctcggta
aagccaaacacaattactccaaatatcctcaaagtaggagatgtcgtgtacgggcggata
tctgacgtccgtgagtccggggcaatggtggaagtcgcaggaattgaagggaaagaaaac
agggaaatcgttagtgtaaggaccggagatattcatgtctccagtgtgagagattcctat
gtgaagaggctggcagatgagttcaggccttctgacatagtaagagcaaaggtagttgac
gttgagagaatgcgccttactacagctgaagattctcttggagttgtaaaagcttactgt
tcaaactgcaaaggagaacttgtgctggaagggaaaaagcttaaatgcccggtctgcaat
atgactgaaacccgcaagatctcaactgagtatgggaaagggatcaggtaa
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