KEGG   Methanosarcina mazei Go1: MM_1879
Entry
MM_1879           CDS       T00082                                 
Name
(GenBank) putative RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
mma  Methanosarcina mazei Go1
Pathway
mma03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mma00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    MM_1879
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mma03019]
    MM_1879
Messenger RNA biogenesis [BR:mma03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     MM_1879
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     MM_1879
SSDB
Motif
Pfam: ECR1_N EXOSC1 ECR1_N_2 HypA S1_RRP5 OB_RRP5_4th zf-C3HC4_3
Other DBs
NCBI-ProteinID: AAM31575
UniProt: Q8PVT1
LinkDB
Position
2233429..2234379
AA seq 316 aa
MIRIRKNKTTRKKLTGPGEGKNGAEKSAPSNEESRDQFKGQQKDQPRTQFKSQPREQSRD
QFKGQPRAQYKSQPRDQSRGQFRDQSRDQFKGSPDKKRKFPYSKKGPRDRKETPGFRPPT
AEAVVSEEDLEKGGFVLPGELVGTTEEFKSGNGTAVIAGDIYSTATGNVLIDRKARVVSV
KPNTITPNILKVGDVVYGRISDVRESGAMVEVAGIEGKENREIVSVRTGDIHVSSVRDSY
VKRLADEFRPSDIVRAKVVDVERMRLTTAEDSLGVVKAYCSNCKGELVLEGKKLKCPVCN
MTETRKISTEYGKGIR
NT seq 951 nt   +upstreamnt  +downstreamnt
atgattagaattcgaaaaaataagactaccaggaaaaaattaacaggtcctggtgaagga
aagaacggagctgagaaatcggctccttcaaatgaagaaagcagggatcaatttaagggt
cagcaaaaggatcagcccaggactcaatttaaaagccagcccagggagcagtcaagagac
cagtttaaaggtcagccccgagctcagtataagtctcagcccagagaccagtccagaggg
caattcagagaccagtcaagggaccagttcaaaggcagccctgataaaaagagaaaattc
ccatattccaagaaaggtcccagagatagaaaggaaactccgggtttcaggccccctacc
gcagaagccgttgtatctgaagaagatctcgaaaaaggaggctttgtacttcctggagaa
cttgtcggaactacagaagagttcaaatcgggcaatggaactgcagtaattgcaggagac
atctattccactgctacgggtaatgtgctcattgacagaaaagccagagtggtctcggta
aagccaaacacaattactccaaatatcctcaaagtaggagatgtcgtgtacgggcggata
tctgacgtccgtgagtccggggcaatggtggaagtcgcaggaattgaagggaaagaaaac
agggaaatcgttagtgtaaggaccggagatattcatgtctccagtgtgagagattcctat
gtgaagaggctggcagatgagttcaggccttctgacatagtaagagcaaaggtagttgac
gttgagagaatgcgccttactacagctgaagattctcttggagttgtaaaagcttactgt
tcaaactgcaaaggagaacttgtgctggaagggaaaaagcttaaatgcccggtctgcaat
atgactgaaacccgcaagatctcaactgagtatgggaaagggatcaggtaa

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