Methanosarcina mazei Go1: MM_2556
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Entry
MM_2556 CDS
T00082
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM_2556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mma03019
]
MM_2556
03009 Ribosome biogenesis [BR:
mma03009
]
MM_2556
Enzymes [BR:
mma01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MM_2556
Messenger RNA biogenesis [BR:
mma03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MM_2556
Ribosome biogenesis [BR:
mma03009
]
Prokaryotic type
rRNA helicases
MM_2556
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Cas3-like_C_2
AAA_19
Utp25_C
Flavi_DEAD
Helicase_C_2
V-ATPase_H_C
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AAM32252
UniProt:
Q8PU01
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All DBs
Position
3039757..3041046
Genome browser
AA seq
429 aa
AA seq
DB search
MFLIYLKYMNMKKQLSSFFRKIMESLTMNNFKKLGLSNAVLKSIDEHGFESPTAIQEKSI
PLILAGEDVIGGAATGSGKTLSFASGILQNSEKGKGIQALILTPTRELAEQVANSLRKFS
KYDPLNIASIYGGVGINTQIKELKNAEVVVGTPGRLLDHISRNTIKLNNVKTLVLDEADH
MFDMGFKVDVEKIIKECPQNRQTLLFSATITKDIVRLSRKYMENPVRVSTESYIDPQKLN
QVVYKVQDDMKLSLLVYLLQNEKSNLGMVFCNTKRNTDKVAKNLRKSSINAVAIHGGLTQ
NERTRILEKFHSGNIGVLVCTDVAGRGLDIQGVSHVYNYDIPRESKQYIHRIGRTARAGT
EGKAINILSKNDHANFMSVLKDNDVDIKEQALPALKKIVIERPDIRLPKPVNRMNNPSRK
GRKPRHKNC
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
ttgtttttaatatatcttaaatatatgaatatgaaaaagcaattaagtagctttttcaga
aaaatcatggaaagtctaactatgaataattttaaaaaactaggtctcagtaatgctgtt
ttgaaatcaatagatgaacatggctttgaaagccctacagcaatacaggaaaaatcaatt
cccctaatacttgctggggaagatgttataggcggagccgcaacaggttccggaaaaaca
ctctcatttgcttccggcatattacaaaattccgaaaaaggaaaaggaattcaggctttg
atcctgacccctacaagagaactggcggagcaggtagcaaattctttaaggaaattctca
aaatacgacccgttaaatatcgcatctatctatggcggtgtagggatcaatacacaaatt
aaagaattaaaaaatgccgaggttgttgtgggaacacccggtaggctactcgatcatatc
agcagaaatactatcaaactcaataatgtgaaaacccttgtccttgatgaggcagaccat
atgtttgatatgggattcaaagtggatgtagaaaaaattatcaaggaatgtcctcaaaac
aggcagacccttttgttctctgcgaccattacaaaagatattgtccggctttcccgcaag
tacatggaaaatccggttcgagtatcaacagagtcttatatcgacccgcaaaaattgaat
caggtcgtttataaagtacaggatgacatgaaattatctctgctcgtgtaccttctacaa
aatgagaagtcaaacctcggtatggttttctgcaacacaaaaagaaacactgacaaagtc
gcaaaaaacctgagaaaatcaagtatcaatgccgtggcaattcatggaggattgacacag
aacgaacgaactcgcatactggaaaaattccattccgggaacataggtgtccttgtatgc
acagatgtagccggaagagggcttgatatacagggtgtttcccatgtttacaattatgat
attcccagggagagtaaacagtatattcacaggattggaagaactgcacgagcaggaaca
gaaggaaaagcgataaatatcctttccaaaaatgaccatgctaatttcatgagtgtgctg
aaagacaatgatgtggatattaaggaacaggcactacctgctctgaagaagattgtaatt
gaaagaccggatataaggttgccaaagccggtaaataggatgaacaacccctccagaaaa
ggtcgtaaacccaggcacaaaaactgttag
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