Methanosarcina mazei Go1: MM_2622
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Entry
MM_2622 CDS
T00082
Name
(GenBank) hypothetical protein
KO
K03679
exosome complex component RRP4
Organism
mma
Methanosarcina mazei Go1
Pathway
mma03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mma00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MM_2622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mma03019
]
MM_2622
Messenger RNA biogenesis [BR:
mma03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MM_2622
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MM_2622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AAM32318
UniProt:
Q8PTT9
LinkDB
All DBs
Position
3124451..3125233
Genome browser
AA seq
260 aa
AA seq
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MDKKIVIPGDLLSDDVKKSGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSVND
VVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRDVDSS
MKIELALRDPNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDIELLSKALRKIEAEAQRSGLTDRIYNFLKNERMKEKESKPVEFLKNEKTDVSVA
KEDHSEDIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgatgatgtaaaaaaatccgga
tacgggacgtatgtcaagaacgacaaaatctattcttcgctttgcggcattgaaagcctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcggtgaacgat
gtggtgataggggtcgttattgtggttactccatccaactggatactggatattgcagct
ccttatgacggtttgcttcatgtgtccgagtatccgagacgagtcgaatcccgggaaatg
cctgaaattctggacgtaggcgactctgttattctcagggtgagagatgtggacagctcc
atgaaaatcgagcttgccctgagagacccgaaccttcataaacttaggacaggccagatt
gttgaggttgagcctgtgaaagttccccgtgtaataggacacggcggttccatgatctca
atgctgaagaaagagacaaactgcagcattttcgtaggtcagaacggcaggatatggatt
gatgggaaggacgaggatatagagcttttgagtaaggctctccggaaaatcgaagctgaa
gcccagcgttccgggttgacagaccggatctacaattttttgaaaaatgaacggatgaaa
gagaaagagtccaagcccgttgaatttttaaaaaatgaaaagacggatgtgagtgtggca
aaggaagatcattccgaggatatataccggaagatcgatgtactgctggaccccaagaat
tga
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