Moritella marina: FR932_16045
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Entry
FR932_16045 CDS
T06214
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mmaa
Moritella marina
Pathway
mmaa02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mmaa00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FR932_16045 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaa03021
]
FR932_16045 (rpoD)
Transcription machinery [BR:
mmaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FR932_16045 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
TMPIT
DinB_2
Motif
Other DBs
NCBI-ProteinID:
QFI39253
UniProt:
A0A5J6WMD2
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All DBs
Position
3575334..3577160
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AA seq
608 aa
AA seq
DB search
MESPQSQLKLLVAKGKEQGYLTYAEVNDHLPQDIVDSDQVEDIIQMINDMGIQVLETAPD
ADDLLMAENTSAPDEDAAEAAAAALASVESEIGRTTDPVRMYMREMGTVELLTREGEIKI
AKRIEEGIYAVQTAVAEYPEAINSLLAEYDKFLAEETRLSDIITGFIDPNAEDVAPTATH
IGSEVPTKDDDSAEDDDEEEEEGNKGPDPEEAAEKFAELRKFHTALLKGIKEDGLEHPKT
RLQVEMLSEVFRTFRLIPKQFDRIVNNMRDMMDHVRVQERLVIKMCVEHCKMPKAAFVEA
FAGHETDITWFEKAQQSAAPYAQALQRIDFDVRRCINKLKLVENTTGLTISQIKNINRRM
SIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY
KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREATPEELAE
RMMMPEDRIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLSLPVDAATKDSLKGATD
DVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSE
QLRSFLDE
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atggaatcccctcaatcacaattaaaacttcttgtagctaaaggtaaagaacaaggttac
ctcacctatgcagaagtaaatgatcatttaccacaagatattgtggactcagatcaggtt
gaagatattattcaaatgatcaatgacatgggtattcaagtgctagaaactgcacctgat
gcagatgacctattgatggcagaaaatacatcagcacctgatgaagatgccgctgaagcc
gcagccgcagcgcttgcttctgtagaatctgaaattggtcgtactaccgatccagtacgt
atgtacatgcgtgagatgggtactgttgagctattgactcgtgaaggcgagatcaaaatt
gcaaaacgtattgaagaaggtatctacgcagtacaaacggctgtagctgaatacccagaa
gcaattaactcgttacttgctgaatacgacaaattccttgctgaagaaacacgcttaagc
gacatcatcacaggtttcatcgatccaaatgcggaggatgtagcaccaacagcaacacat
atcggctctgaagtaccaaccaaagatgacgattcagctgaagatgatgacgaagaagag
gaagaaggcaataaaggccctgatcctgaagaagcagctgaaaaatttgcagaattacgt
aaatttcacacagcactactaaaaggcattaaagaagacggtttagaacacccgaaaaca
cgcctgcaagttgaaatgctaagtgaagtattccgtactttccgtttgatcccaaaacaa
tttgatcgcattgtaaataacatgcgtgacatgatggatcacgtacgtgtgcaagaacgt
cttgttatcaagatgtgtgttgaacattgtaaaatgccaaaagcagcgttcgttgaagca
tttgctggtcacgaaactgacattacttggtttgaaaaagcacaacaatcagcagcacct
tatgcgcaagcattacaacgtatcgattttgacgtacgtcgttgcatcaacaaattaaaa
ttagtagaaaatacgacaggtctgactatttctcagatcaaaaacatcaaccgtcgtatg
agcattggtgaagcgaaagcgcgtcgtgcgaaaaaagaaatggttgaagcgaatttacgt
ctagtaatttcgattgccaaaaaatataccaaccgtggtctacagttcctagatttaatc
caggaaggtaacatcggtctgatgaaagccgtagataagtttgaataccgtcgtggttac
aaattctcaacttacgctacatggtggatccgtcaggcaatcacacgttctattgctgac
caagcgcgtacaattcgtattccagtgcatatgattgaaacaatcaataaactgaatcgt
atttcgcgtcaaatgctgcaagagatgggccgtgaagcaacgccagaagaattggctgag
cgcatgatgatgccagaagatcgtattcgtaaagtattgaagattgctaaagagccaatc
tcaatggaaactcctatcggtgatgatgaagattctcacttaggcgatttcattgaagat
acaacgctttctttaccagttgacgctgctacaaaagatagccttaaaggcgcgacagac
gacgttctagcaggcctaacagcccgtgaagcgaaagtactgcgtatgcgttttggtatc
gatatgaatactgaccacacacttgaagaagtgggtaaacagttcgatgtaacgcgtgag
cgtattcgtcaaattgaagctaaggcattacgtaaattacgtcatcctagccgcagcgaa
cagctacgcagcttcctagacgagtaa
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