Methanosarcina mazei C16: MSMAC_0103
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Entry
MSMAC_0103 CDS
T04626
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mmac
Methanosarcina mazei C16
Pathway
mmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAC_0103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmac03019
]
MSMAC_0103
03400 DNA repair and recombination proteins [BR:
mmac03400
]
MSMAC_0103
Enzymes [BR:
mmac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MSMAC_0103
Messenger RNA biogenesis [BR:
mmac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MSMAC_0103
DNA repair and recombination proteins [BR:
mmac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MSMAC_0103
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
HTH_40
Helicase_Sgs1
ResIII
EutK_C
Sigma70_r4_2
HTH_7
Motif
Other DBs
NCBI-ProteinID:
AKB69993
LinkDB
All DBs
Position
130761..133391
Genome browser
AA seq
876 aa
AA seq
DB search
MSSRMHSVLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVT
VVVSPLISLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLENRLKVLYIAPERLMM
PGTFAFLKKGKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTATAT
ERVKKDIVSQLGLNIDPEKGPYVASFNRSNLYYEVRPKKDTFSEITDYLLRHRGEAGIIY
CQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATIAFGMGINK
SNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQKTNEKEKD
ISLVQLRQMVAYCEGNKCRRQTLMEYFGEELSTPCGNCDTCLRPKNTFDGTEAARKLISC
IQDLNQRFGTNYVIDVLTGSKNKKIRQNRHEKLKSHGSGREFTKEQWRSLASEILNTGLL
EVHGAQYPVLKLNAMSRKILNGLEKVELVCPDGFIPGAEESFTLPAPAGKIQEKSENDKQ
IPAREDSVAPPLKIPKSGTFPKSGTEHDPILFERLKALRKKIALNKNLPPYIIFSDTSLK
EMAAKFPLTSDEFHSITGVGDHKLRKYGDEFLKEIGDYCRDYGLTPSGKVNLSGDCFTDL
EKEKEDLKSPLYETSVSGLEIEAQGNDISSSEAGKEKSLETPFSYAPPKKSSEIRRSPVK
RVKYLDMSIQDWSETDSSKPDSPDSSFLEIDSFEKDTFEIENSEINSTDMDIFENSSLEK
TYALYEKGLDIGEIAEIEGLSIKNVYRQFEKLVLSGKVRKIERLVPSERQEQVKSLMEEL
EIEIDALIRAKTGEGCQEEELNLIRALLMSKILYPI
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctagaatgcattctgttctccgccagtacttcggatatactgctttcagaccc
cttcaggaagaaattatcagagatgttctggaccggaaagacgtgtttgtgctgatgccc
acaggaggaggcaaatccatatgctaccagttgccttccctgcttctggacggagttact
gttgtagtttctcccctgatttcccttatgaaagaccaggtggacgggcttgaagcaaac
gggattgctgcggcctgcatgaacagcacccagagccccagagaaaaccgggatgttaaa
aacgcttttctggaaaacagattgaaggtactctatattgctccagagaggcttatgatg
cccgggactttcgcttttctgaagaaaggcaaggtaagtctttttgcaattgatgaggct
cactgtatttcggaatggggacatgacttccggcccgagtacagaaaattgaaactcttg
agggacccaaagaacggttttcctgatgtgcctgttattgcacttacggctacagctacc
gagagggtcaaaaaagatatagtgtcccagctcgggcttaatatcgatccggaaaaaggt
ccttacgttgccagctttaaccggagcaacctttactacgaggtcaggccaaagaaagac
accttttcagagataaccgactatctactcagacacaggggagaagccggaattatttac
tgccagagccggaacaatgtagaaacccttacaagaaaactgaaccttgccgggttcagg
gctctcccctatcatgccgggctttcggattctgagcgttcccggaaccaggaaatgttc
ataagagacgatgtggacataatagtggctactattgccttcgggatgggtatcaataag
tccaatgtcaggtttgtaattcattacgatcttccgagaaaccttgaaagttattaccag
gaaacggggcgtgggggcagggacggcagcccatgcgagtgtatccttttctttagcaga
ggagaccgctttaaaatagaatacttcatagctcagaaaacaaacgagaaagaaaaggat
atttcccttgtacagttaaggcagatggtagcttattgcgaaggtaataaatgcaggcgg
cagactctaatggaatatttcggtgaagaactttcaacaccatgcggcaattgcgatacc
tgcctcaggcctaaaaatacttttgatggaactgaagctgccagaaaactgatttcctgt
atccaggacttgaaccagcgttttggtacgaattacgttattgatgttctcacgggctca
aaaaataaaaagatcaggcagaaccgccatgaaaagctgaaatcccacggcagcggcagg
gaatttacaaaggagcaatggaggtcgcttgcttccgaaattctgaataccgggcttctg
gaagtccacggagctcaataccctgtcctgaaacttaacgctatgagcaggaaaattttg
aacggtttggaaaaagttgaacttgtctgtcctgacggttttatacccggagctgaagag
agtttcacgcttccagcacctgcaggcaaaattcaggaaaaaagtgagaacgataaacaa
attcccgcccgggaggattcagttgctcctcctcttaaaataccgaagtccggaacattt
ccaaaatctggaacagagcatgaccctattctttttgagagattaaaagccctcagaaag
aagatcgctttaaacaaaaacctccctccttatatcatattttctgacacaagcctcaaa
gagatggctgcaaagttccctcttacttctgatgagtttcattcaattacaggagtagga
gaccataagctccggaaatatggggatgaatttcttaaagagatcggtgattactgcaga
gactatggcctgacaccttcagggaaagttaacctttccggagactgctttactgatctc
gaaaaagaaaaggaagatttaaagagcccattatatgaaacatcagtttcaggtctcgaa
attgaagcccagggaaatgatatttcctcttctgaagccggtaaagagaaaagtttagaa
actccattctcctatgcccctcccaaaaaatcttccgaaatacgcagatcaccagtaaaa
agagtaaagtatctggatatgagcattcaggactggtctgaaacagactcttctaaacct
gattctcctgattcaagttttcttgaaatagattcttttgaaaaggatactttcgagatt
gagaactctgaaatcaattctactgacatggatatttttgaaaattcgtctcttgaaaag
acttatgctctttatgaaaaaggtcttgatatcggagaaattgcagaaattgaagggtta
agtataaaaaacgtttacaggcaatttgaaaaattggtgctttccggtaaggtcagaaaa
attgaaaggcttgtgccttctgaaaggcaggagcaggtcaagtcattaatggaagagctg
gaaattgaaatcgatgccctgataagggcgaaaacgggtgaaggctgccaggaagaggaa
ctgaatctcataagagctcttcttatgtcaaaaattctttatccaatctga
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