Methanosarcina mazei C16: MSMAC_0626
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Entry
MSMAC_0626 CDS
T04626
Name
(GenBank) NMD protein affecting ribosome stability and mRNA decay
KO
K07562
60S ribosomal export protein NMD3
Organism
mmac
Methanosarcina mazei C16
Pathway
mmac03008
Ribosome biogenesis in eukaryotes
mmac03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
MSMAC_0626
03008 Ribosome biogenesis in eukaryotes
MSMAC_0626
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmac03009
]
MSMAC_0626
Ribosome biogenesis [BR:
mmac03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
MSMAC_0626
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NMD3
DUF5846
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
AKB70516
UniProt:
A0A0E3RTU0
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All DBs
Position
complement(759317..760381)
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AA seq
354 aa
AA seq
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MNSITCPKCGTECDKLFDSVCRDCFFETFKLIDLPLVLHVKICSSCGAYFHRSRWENIGN
LEEVVLKAVENALFIHDEAGDVELYLEPKEITPYIYMVRAEVDAIVKGEPVHAETATEVR
VQRIACDMCSRESGGYFEAIIQIRAAGRFPTEEEKRRCSAIAREAMESMKKKGDRLAFIS
DYQEQKEGIDLYMGSMNASRQVCRMIISELGGSFAESPTLVGMKDGKNLYRITFAMRLPE
FRPGDVIRFRGRIIQIRSSGKKVNGISLEDGSRFLSTPEELKGAEKIANIGDAVLTVLVS
IEENAILVLDPVTYETVAIKKPMFFNAEAGSEIPVLKTEYGIFALAHTDIPQEK
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgaattccattacatgcccgaaatgtggcacagaatgcgacaaactttttgattccgtt
tgcagggactgtttctttgaaactttcaaactgattgatctgcctctcgtacttcatgta
aagatctgttccagctgcggagcatatttccacaggagccgctgggaaaacatcggcaat
ctggaggaagtggtgctgaaagccgtagaaaacgcccttttcatccacgatgaagcagga
gatgtggaactctaccttgagccgaaggaaattactccatatatatacatggtgagagcc
gaggtagatgcaattgtaaagggagaaccggtccatgccgagactgcaaccgaagtaagg
gttcagaggatagcctgcgacatgtgcagccgtgaatccggaggttattttgaagcaatt
atccagataagggcagcaggcaggtttccaacagaagaggaaaaaaggcgctgctccgcc
atagccagagaagctatggaaagcatgaaaaaaaagggagatcgactggcatttataagt
gactaccaggaacagaaagaaggcatcgatctttacatgggttccatgaatgcgagcagg
caggtttgccgtatgattatctctgaactggggggcagttttgccgaatctcctacgctc
gtaggtatgaaagacggaaaaaacctttacaggattacttttgccatgcgccttcctgag
ttccgaccaggcgatgtgataaggttcagaggaagaatcatccagatcagaagttcaggc
aagaaagtaaacgggataagccttgaagacggttcccggtttctatcaactcctgaagaa
ctgaagggcgcagaaaagattgcaaacattggagatgcggtacttacggttctggtctca
atcgaagaaaatgcaattcttgtccttgaccctgtgacctatgaaaccgtcgcgataaaa
aagcccatgttctttaacgcagaggcgggaagcgagattcctgtcctgaaaacagaatat
ggaatctttgcactggcacacaccgatattccgcaggaaaaataa
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