Methanosarcina mazei C16: MSMAC_1026
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Entry
MSMAC_1026 CDS
T04626
Name
(GenBank) putative exosome complex RNA-binding protein 1
KO
K03679
exosome complex component RRP4
Organism
mmac
Methanosarcina mazei C16
Pathway
mmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAC_1026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmac03019
]
MSMAC_1026
Messenger RNA biogenesis [BR:
mmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSMAC_1026
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
MSMAC_1026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
ECR1_N
KH_1
RRP4_S1
S1
RRP40_S1
KH_2
Motif
Other DBs
NCBI-ProteinID:
AKB70916
UniProt:
A0A0E3RUN7
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All DBs
Position
1240517..1241299
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AA seq
260 aa
AA seq
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MDKKIVIPGDLLSDDVKKSGYGTYVKNDKIYSSLCGIESLKEDKVGVIPLAGAYIPSMND
VVIGVVIVVTPSNWILDIAAPYDGLLHVSEYPRRVESREMPEILDVGDSVILRVRDVDSS
MKIELALRDPNLHKLRTGQIVEVEPVKVPRVIGHGGSMISMLKKETNCSIFVGQNGRIWI
DGKDEDIELLSKALRKIEAEAQRSGLTDRIYNFLKNERMKEKESKPVEFLKNEKTDVSVA
KEDHSEDIYRKIDVLLDPKN
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaaaatagtgatccctggtgacctgttatccgatgatgtaaaaaaatccgga
tacgggacgtatgtcaagaacgacaaaatctattcttcgctttgcggcattgaaagcctc
aaagaggataaagttggagtgatcccacttgcgggagcgtatatcccctcgatgaacgat
gtggtgataggggtcgttattgtggttactccatccaactggatactggatattgcagct
ccttatgacggtttgcttcatgtgtccgagtatccgagacgagtcgaatcccgggaaatg
cctgaaattctggacgtaggcgactctgttattctcagggtgagagatgtggacagctcc
atgaaaatcgagcttgccctgagagacccgaaccttcataaacttaggacaggccagatt
gttgaggttgagcctgtgaaagttccccgtgtaataggacacggcggttccatgatctca
atgctgaagaaagagacaaactgcagcattttcgtaggtcagaacggcaggatatggatt
gatgggaaggacgaggatatagagcttttgagcaaggctctccggaaaatcgaagctgaa
gcccagcgttccgggttgacagaccggatctacaattttttgaaaaatgaacggatgaaa
gagaaagagtccaagcccgttgaatttttaaaaaatgaaaagacggatgtgagtgtggca
aaggaagatcattccgaggatatataccggaagatcgatgtactgctggaccccaagaat
tga
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