Methanosarcina mazei C16: MSMAC_1028
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Entry
MSMAC_1028 CDS
T04626
Name
(GenBank) putative exosome complex exonuclease 2
KO
K12589
exosome complex component RRP42
Organism
mmac
Methanosarcina mazei C16
Pathway
mmac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MSMAC_1028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmac03019
]
MSMAC_1028
Messenger RNA biogenesis [BR:
mmac03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
MSMAC_1028
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
MSMAC_1028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
HopA1
Motif
Other DBs
NCBI-ProteinID:
AKB70918
UniProt:
A0A0E3RY78
LinkDB
All DBs
Position
1242852..1243643
Genome browser
AA seq
263 aa
AA seq
DB search
MSEIIATLKKDYIYNLMIKDKRQDGRGFKDFRELKLETNVISKAEGSAKVTLGNTQVLVG
VKLQTGTPFPDSQDEGVIITNLELNPIASPEFEPGPPREDAIEMARVVDRGIRESGAIDI
KKLCITVGESVWIVFIDVHILNNDGNIIDASCLAAIAALMTTMVPNEQQGLGENVPLAMK
EMPVGITLAKIGSKLMVDPSLDEEAVCETKLTIVSSSDGSVAGMQKMGPVPLTEAELFEA
IDMAIEKAAEIRGLYLEGLAKNE
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaatcatagccacacttaagaaggattatatttacaacctgatgatcaaagat
aagcgccaggacggtcgcggctttaaagatttcagggaactcaaactcgaaacaaatgtt
atctccaaagcagaaggttctgcaaaggtcacccttggaaacactcaggtgcttgtaggt
gtgaaacttcagactggaaccccgttcccggattcccaggatgaaggtgtgatcattacc
aaccttgagcttaaccccatagcttctcctgagtttgagcccgggccaccgagagaagat
gcaatcgaaatggcaagggtcgttgacagggggatcagggaatcaggcgcaattgatata
aagaagctctgcataacggttggagaatccgtctggattgtctttatagacgtccatatc
ctgaataacgacggaaatatcattgatgcatcctgtctcgctgcaattgcagccctcatg
accaccatggtcccgaacgagcagcagggacttggcgagaacgtgccccttgctatgaaa
gagatgcctgtcggcataacacttgccaagatcggctcaaaacttatggttgacccctcg
cttgatgaggaagcggtctgcgaaacgaaactgacaatagtttcaagttcggacgggtct
gttgcaggcatgcagaaaatgggccctgtcccccttacagaggcagagctcttcgaagct
atagatatggcaatcgaaaaggcagctgaaatccgcgggctttaccttgaagggctcgca
aaaaatgaataa
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