Methanosarcina mazei C16: MSMAC_1572
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Entry
MSMAC_1572 CDS
T04626
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
mmac
Methanosarcina mazei C16
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmac03016
]
MSMAC_1572
Enzymes [BR:
mmac01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
MSMAC_1572
Transfer RNA biogenesis [BR:
mmac03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
MSMAC_1572
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Corona_NS2A
Sigma_reg_C
Motif
Other DBs
NCBI-ProteinID:
AKB71462
UniProt:
A0A0E3RYC0
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All DBs
Position
1922126..1922671
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AA seq
181 aa
AA seq
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MIRTFIAVELDPGFGGKIRQVQERFSEFDLKFVNPEIVHITLKFLGDIKESKVPSIAAAL
DSIMCEPFEAKIVGLGVFPKPSNPKVLWLGAEGNFETLHNDVETVLKPFGFKEDERGFTA
HATLARVKSLNKDQKNSFINIVKELKNIEIGSMQVNKVLLKKSTLTPEGPIYETLHTVFL
D
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
ttgataaggacatttatcgcagtggagcttgaccctggtttcggggggaaaatccgccag
gttcaggaaaggttttcagagtttgacctgaagtttgttaaccccgaaattgttcatata
accctgaagtttctgggcgatattaaagaatcaaaggttccatccattgctgcagctctt
gattccattatgtgcgagcctttcgaagcaaaaatcgtgggtctcggggtttttcctaag
ccttcaaaccctaaagtcctgtggctgggagcagaaggaaactttgaaactcttcacaat
gatgtggaaacagtactgaaacccttcgggttcaaagaggacgaaagaggttttactgcc
catgcaactcttgcaagggtaaaatctctaaataaagatcaaaaaaattcttttataaat
atcgttaaagaattaaagaatatcgagattggaagtatgcaggtgaacaaagttcttctt
aaaaaaagtactcttactcctgaaggtcctatctatgagactctgcatacggtattcctt
gactga
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