Methanosarcina mazei C16: MSMAC_2128
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Entry
MSMAC_2128 CDS
T04626
Name
(GenBank) Putative ski2-type helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
mmac
Methanosarcina mazei C16
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmac03019
]
MSMAC_2128
Messenger RNA biogenesis [BR:
mmac03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
MSMAC_2128
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
DEXQc_Suv3
MGP3_C
Ribosomal_S13_N
Motif
Other DBs
NCBI-ProteinID:
AKB72018
LinkDB
All DBs
Position
2607013..2609493
Genome browser
AA seq
826 aa
AA seq
DB search
MTLWVLGYAEKSKVIVMTIKDRLKQPLSVAELHIKESYKGPRPHKIRVLSGKKNEEFIPP
QQFIELLRSANRIMLAEGGDPSNEEAFLEMLKGFQISADRVKICKHCWINKRFNFVNSKS
IRYHDELICEDCAKEELLRAVRSAGTQYGEKSVDFLEQVLHKTRDLDRTIRMLSPERLDP
EFTRYDTIRTTPSEVRVRIRDLPLAKKFKEMLLEKSETLLPVQGLSIEAGLLERKNQFVV
SATATGKTLIGEMAGVQNLLNKKGKMLYLVPLVALANQKYDQFTERYSKLGLTTSIKIGA
ILIKTSQRVKMRTSPNADIIVGTYEGVDHMLRSGNADFLGKIGTVVIDEVHTLEDQERGH
RLDGLIGRLRYVAPEAQFIYLSATVANPAGYAKKLGAQLIRYEHRPVPIDRHLLFCQDSE
KAKLISQLAKEEYSMFSSKNHRGQTIVFTNSRRNCHKLAGTLSIRASPYHAGLSQYERKK
VETLFAKGELPVIVTTAALAAGVDFPASQVIFESLAMGIDWISVQDFLQMSGRAGRPDYH
DRGVVVLMPVPGKSYSSAQSDTEEEVAIKLLQGEMLSAGVEYGEAEQLEEVLASVAVTSS
VQDLRGIHSLMFGSFDLDRLVSRLQSYRFIEKKGAKISLTRFGKIISAHFLPVSKAFLIR
DAVLEDNNPIKIATNLEFFDAAYFKYSNQIGSSLHVNMPSRVFQGAALDIVFDGESLSQL
DIKIRELMLNFASDFLTCGCRDSPYCGCAEQKFSEKIIRLRMEGNDPSQIIRTLEDKYGI
SAYQGDVFGYLDNAVRNLDAIELIARVHSKREVAENAKKLKKKVQG
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgacactatgggtcctcggttacgccgaaaaatcaaaagttatagtaatgacaataaaa
gaccggttgaagcagcctctttccgtggccgagctccatataaaggaaagttacaaaggt
ccacgtcctcataaaataagggttctttccggcaaaaagaatgaggaatttattcctccc
cagcagttcatagagcttttaagaagtgcaaacaggatcatgctggcagaaggaggggac
ccttcaaatgaagaagcattccttgaaatgcttaaaggatttcagatcagtgcagatagg
gtaaagatttgcaaacactgctggatcaataagcgtttcaatttcgtaaacagcaagtca
atcaggtaccatgatgaacttatctgtgaagactgcgcaaaagaagaactcctgcgtgca
gtccgttcagcaggcacacagtatggagaaaaatctgtagattttcttgaacaggttctc
cataagacccgggaccttgaccggacaatccgtatgctgagccctgagaggctggaccct
gagtttacaaggtatgatactatcaggacaacaccttcagaagttagagtcaggataagg
gacctgccccttgcaaaaaaattcaaagaaatgcttcttgaaaaatccgaaaccctgctt
cctgtgcagggactgtccatagaagccgggcttctggaaaggaaaaaccagtttgtggtt
tctgcaaccgcaaccgggaaaactcttataggggaaatggcaggagtccagaaccttttg
aataaaaaagggaaaatgctctaccttgtccctcttgtagccctggcaaaccagaagtat
gaccagttcacagagcgttattcaaagctcgggcttacaacttccatcaaaattggcgca
attctcataaagacttcccagcgcgtgaaaatgcggacaagcccgaatgccgatatcatt
gtggggacctatgaaggcgtggaccacatgctccgttcgggaaatgctgattttctcggt
aaaattgggactgttgttatagacgaggtacacacccttgaagaccaggaaagagggcac
aggcttgacgggcttataggtaggcttcgttatgtggctcctgaagcccagtttatctat
ctctcggcaaccgttgcaaatcctgcaggatatgcaaagaagctcggagcacagcttatt
cgctatgagcacaggcctgttcctatagaccgtcatctccttttctgccaggacagtgaa
aaggcaaaactgatctcccagcttgcaaaagaagagtattcaatgttctcttcgaaaaat
cacaggggacagacaatagtttttacgaattccaggagaaactgccataaactggcagga
acactttctatccgggcttctccctatcacgcagggctttctcagtatgaaaggaaaaag
gtagaaaccctttttgcaaaaggagaacttcctgtaatcgtgaccactgccgcccttgca
gctggagtggatttcccggcttctcaggttattttcgaatcccttgcaatgggcatagac
tggatttcggtccaggacttcctgcagatgagcggaagagcaggcagacctgattatcac
gatcggggagttgtagtcctcatgccggttccggggaaatcatattcaagcgcacagtcc
gatactgaagaagaggttgcaatcaagttattgcagggagagatgctttctgcaggggtt
gaatacggggaagccgaacagcttgaagaggtgcttgcttcagttgcagttacttcttcg
gtccaggatttaaggggtatccattctcttatgtttggaagctttgacctcgacaggctg
gtttctcgccttcagagctacaggttcattgagaaaaagggagccaaaatctcactgacc
aggttcggaaaaattatttcagctcatttccttccggtttccaaagctttccttatccgg
gatgccgtacttgaggacaacaacccgataaaaattgcaaccaacctggaatttttcgat
gctgcatacttcaagtactcaaaccagatcggaagttccctgcatgttaatatgccatcc
agggtctttcagggggcagctcttgatattgtctttgatggtgaatccctgtcccagctc
gacataaaaataagggaacttatgctgaactttgcctctgactttttaacatgcggatgc
agggattccccttattgcggatgcgcagagcagaaattttcagagaagattatccggctg
cgtatggaaggcaatgatccctcccagatcatcaggacccttgaagataagtacggaata
tcggcatatcagggagatgttttcggatacctggacaatgcagtgcgtaaccttgacgcc
attgagctgattgcaagggttcattcgaaaagggaagttgcagaaaatgcaaagaaactt
aaaaagaaagttcagggctga
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