Methanosarcina mazei C16: MSMAC_2450
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Entry
MSMAC_2450 CDS
T04626
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mmac
Methanosarcina mazei C16
Pathway
mmac03410
Base excision repair
mmac03430
Mismatch repair
mmac03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
MSMAC_2450
03430 Mismatch repair
MSMAC_2450
03440 Homologous recombination
MSMAC_2450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmac03400
]
MSMAC_2450
DNA repair and recombination proteins [BR:
mmac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
MSMAC_2450
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
MSMAC_2450
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MSMAC_2450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
DHH_CID
Motif
Other DBs
NCBI-ProteinID:
AKB72340
UniProt:
A0A0E3WRA5
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All DBs
Position
2997273..2998610
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AA seq
445 aa
AA seq
DB search
MSELEKLINLAKNAADKIRRHKFVRVISHNDADGLTSAGIMAHALLRAGIPFQLSIASKL
DGAVIEEVNRSISSGELVIFCDMGSGHPELIKQVGADVVIIDHHQPVGQSPAKAVVNAHM
VGIDGATDISASGTCYLVARELGTGNIDLAGLAIAGAVGDRQLFRTANAFILEEALKSGV
VSIRKGLKVGDGNLADVLAYSKEPFLDVTGFPEKAAEFLNQLGLSGNIEDLSEEETSKLA
SAVALKLVKQASPEAIEAVIGEVFLLNRELVHNVYDFISILNTCGKQKVYGLALALCLKD
ATILDEAFSLTKDHEKNLAIDIRKNVENIRKGENLWYISTVEAISTGDLATTVVRYLHPE
LPFICVNESEGILKVSARGTRELVSKGLDLAFTLREAAGAAGGNGGGHSVASGASIPLGS
TEEFLSIADRIIGEQLRKNASGKVK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
ttgagtgagcttgaaaaactgataaatcttgcaaaaaatgcagccgataaaatacgcagg
cataaatttgtgcgcgtgatttcacataacgatgctgacgggctaacttcagccggaata
atggcccacgcccttttgagggctggcatcccttttcagctttcaatagccagcaagctg
gacggggctgtaattgaagaagtgaacaggagcatctcttcaggagaacttgtcattttc
tgtgatatgggcagcgggcatccagaacttattaaacaagtgggcgcggatgttgttata
attgaccaccaccagccagtagggcagtcccccgcaaaagctgtggtaaacgcacatatg
gtaggaatagacggggcaacggatatctcggcttcaggaacctgttatcttgtagctcgg
gaactcgggacaggaaacatcgaccttgcagggctcgcaattgcaggggcagttggagac
aggcagcttttccggactgcaaatgctttcatcctggaagaagccttaaaatcaggggtt
gtttccatcagaaaagggttaaaagtcggggatggaaatcttgcagacgtgctcgcatac
agcaaagagccttttctagatgtaaccggtttcccggaaaaagcggcggaattcttaaat
cagcttgggctttccggaaacattgaagatctttccgaagaagagacctcaaaacttgcc
agtgctgttgccctgaaacttgtcaaacaggcaagccctgaagcaattgaagcggttatc
ggggaagttttcctgctcaaccgggaacttgtccacaatgtttatgatttcatttccata
ctcaatacctgcgggaagcaaaaggtttacgggcttgccctcgctctctgcctgaaagac
gcaactatccttgatgaagccttttcccttacaaaggatcatgaaaagaatcttgccatc
gatatccggaaaaatgtggaaaatattcgcaaaggggaaaacctctggtatatcagcacg
gttgaagccatctcgacaggggaccttgcaacaaccgtagtcagatacctccatcccgag
cttccttttatctgtgtaaacgaatctgaaggtattttaaaggtttctgcccgaggtact
cgtgaactcgtttcaaaagggcttgaccttgcctttaccctcagggaagctgctggtgct
gcaggcggaaacggaggagggcacagtgttgcatccggagcttcaatacccttgggaagt
acggaggagttcctgagcattgcagaccgtataatcggggagcagctcaggaaaaacgcc
agtgggaaagtaaaatga
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