Methanococcus maripaludis DSM 2067: MMJJ_05730
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Entry
MMJJ_05730 CDS
T06430
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmad
Methanococcus maripaludis DSM 2067
Pathway
mmad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMJJ_05730 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmad03019
]
MMJJ_05730 (cshA)
03009 Ribosome biogenesis [BR:
mmad03009
]
MMJJ_05730 (cshA)
Enzymes [BR:
mmad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMJJ_05730 (cshA)
Messenger RNA biogenesis [BR:
mmad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMJJ_05730 (cshA)
Ribosome biogenesis [BR:
mmad03009
]
Prokaryotic type
rRNA helicases
MMJJ_05730 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
Cas3-like_C_2
AAA_30
Helicase_RecD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AVB75989
UniProt:
A0A2L1C9J8
LinkDB
All DBs
Position
complement(537103..538719)
Genome browser
AA seq
538 aa
AA seq
DB search
MESFKNLGLSDEILEALEKKGFTNPTPIQEQAIPILIEGKRDIVGQAQTGTGKTAAFGIP
ILETIDEHSRNTQALILAPTRELAIQVAEEIDSIKGSKRLNVFPVYGGQSIDRQIRELRR
GVQIVVGTPGRILDHISRRTIKLENVSYVVLDEADEMLNMGFIDDVEEILKSVSTDKRML
LFSATLPDSIMKLAKNYMREYDIIKVKRQQLTTTLTDQSFYEIHSRDKFELLSRIIDTEK
EFYGLIFCKTKADVDEVANRLNEKGYAAEGLHGDMTQAQREKTLDKFKGKKINVLVATDV
AARGIDINDLTHVVNFDIPQNPESYVHRIGRTGRAGKQGYAITFVEPSEFRKFKYIQKIA
KTEIKREEVPDVKDIISAKKIKIISGIKEVLESGKYADCEKMASDLLEDADPQEVLSAVL
KYALKDELSESNYKKIGRGSQRSERSGRNDSRGRRSFAPGENVRLFVALGKLDKMNPKKL
VDHISRKSDVKGRDIDDVKVFEKFSFVTVSSSDAEIILDSFKNERRGRRSIIEVASGN
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atggaaagttttaaaaatttaggtctatctgacgagatattagaagcattagaaaagaaa
ggcttcacaaacccaacccctattcaggaacaagcaattcctattttaattgaaggaaaa
agagatattgtcggccaagctcaaacaggtactggaaaaaccgcagcatttggtattcct
attttagaaacaattgacgaacactcaaggaacacgcaagcacttattttagcacctaca
agagaactcgcaatacaagttgcagaagaaatcgattcaatcaaaggttcaaaaagattg
aatgttttcccggtatacggcggtcaatcaattgatagacagataagagaattaagaaga
ggagttcagattgttgttggaactcctggaaggatcctcgaccacatctcaagaagaaca
ataaaacttgaaaacgtttcatatgtagttttagatgaagctgacgaaatgttaaacatg
ggattcattgacgatgttgaagaaatcttaaaatcagtaagcactgacaaaagaatgctt
ttattctcagcaacacttcctgatagtatcatgaaacttgctaaaaattacatgagagaa
tacgacattatcaaagttaaaagacagcagcttacaactactttaaccgaccaatcattc
tatgaaattcactcaagagataaatttgaattactttcaagaatcattgacacggaaaaa
gaattttacggtttaattttctgtaaaacaaaagcagacgttgacgaagttgcaaacaga
ttgaatgagaaagggtatgctgcagaaggtcttcacggggacatgacccaagctcaaaga
gaaaaaacactcgacaaatttaaaggaaagaaaatcaacgttctcgtagcaactgatgtt
gcagcaagaggaattgatatcaacgatttaacacacgttgtaaactttgatattccacaa
aatcctgaatcatacgtccacagaattggaagaacaggccgagctggaaaacaaggttat
gcaattacatttgttgaaccttcagaatttaggaagtttaaatacatccaaaaaattgca
aaaactgaaattaaaagagaagaagttcctgatgttaaagatataatcagtgctaaaaaa
ataaaaatcatttccggaataaaagaagttttagaatctggaaaatacgctgattgcgaa
aaaatggcttctgatttattagaagatgcagatcctcaagaagttctttcagcagtttta
aaatatgctttaaaagatgaattaagtgaatcaaactacaaaaaaattggaagaggttca
caaagatctgaaagatctggaagaaatgacagcagaggaagaagatctttcgcacctggt
gaaaacgtaagactctttgtagctttaggtaaacttgataaaatgaaccctaaaaaatta
gtggatcacatttcaagaaaatccgatgttaaaggaagagacatcgacgatgtaaaagta
tttgagaaattttcctttgtaactgtatcttcaagcgatgcagaaataattcttgattca
ttcaagaacgaaagaagaggaagaagatcaataatcgaagttgcaagcggcaactaa
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