Mycobacterium marinum E11: MMARE11_09470
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Entry
MMARE11_09470 CDS
T04774
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta chain, RpoC
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmae
Mycobacterium marinum E11
Pathway
mmae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MMARE11_09470 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmae03021
]
MMARE11_09470 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmae03400
]
MMARE11_09470 (rpoC)
Enzymes [BR:
mmae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MMARE11_09470 (rpoC)
Transcription machinery [BR:
mmae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MMARE11_09470 (rpoC)
DNA repair and recombination proteins [BR:
mmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MMARE11_09470 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
CDM75095
LinkDB
All DBs
Position
1161509..1165459
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AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITSVDNEMRHNELSTLEAEMMVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDSGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAEILRDVIRNGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYYLTTEVEGDKGAYQ
PAGQDSPETGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAEIEDALFGHNGWQPGD
AWTAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDSG
FYWATRSGVTVSMADVLVPPRKKEILDSYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPADNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIMVE
LAERQGDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPEIEACLAAGITQV
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAESGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgctagacgtcaacttcttcgatgagctccggatcggcctggctaccgcggaggacatc
cgtcagtggtcctacggcgaggtcaagaagccggagaccatcaactaccggaccttgaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgcgttcgcttcaagggcatcatctgtgagcgctgtggcgtc
gaggtgactcgggccaaggtgcgtcgtgagcggatgggccacatcgagttggccgcgcct
gtcacccacatctggtacttcaagggcgtcccgtcgcggttggggtacctgttggacctg
gcgccgaaggatctcgagaagatcatctacttcgccgcatacgtgatcacctcggtcgac
aacgaaatgcgccacaacgagctgtccacgctcgaggccgaaatgatggtggagcgcaag
gccgtcgaggaccagcgcgatgccgatctggaagcccgtgcccagaagctggaggccgac
ctggccgagctcgaggccgagggcgcgaaagccgacgcgcggcgcaaggtccgtgacagc
ggtgagcgcgagatgcgtcagctgcgcgaccgggcccagcgtgagctggaccggctcgag
gacatctggagcaccttcaccaagctggcccccaagcagctgatcgtcgacgagaacctc
taccgggaactgcaggaccgctacggcgagtacttcaccggtgccatgggcgcggagtcg
atccagaagctgatcgagaccttcgacatcgacgccgaagccgagatcctgcgggacgtc
attcgcaatggcaaggggcagaagaagcttcgtgccctcaagcgcctgaaggtggtcgcc
gccttccagcagtcgggcaactctccgatgggaatggtgctcgatgcggtgccggtgatt
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgccaccagcgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgtctcaagaggctgatcgacctc
ggcgcacccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgcggccggccggttaccggtccgggtaaccgcccgctcaag
tcgctgtccgatctgctcaagggcaagcagggccggttccgtcagaacctgctcggtaag
cgtgttgactactcgggccgttcggtgatcgtggtcggtccccagctcaagctgcaccag
tgtggtctgcccaagctgatggcgctggaactgttcaagccgttcgtgatgaagcgactg
gtcgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgccagcgt
ccgcaggtgtgggacgtgctcgaggaagtcattgcagagcacccggtgctgctcaaccgc
gcgcccaccctgcaccgcctcggcatccaggccttcgaaccgatgctggtggaaggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagcgccgaggctcaggccgaggcgcgcattctgatgctg
tcgagtaacaacatcctgtcgccggcctcgggtcgcccgctggccatgccgcgactggac
atggtgaccgggttgtactacctgaccaccgaggtcgagggtgacaagggtgcctaccag
cccgctgggcaggacagcccggagacgggtgtgtactcgtcaccggcggaagccatcatg
gcggccgaccggggcgtgctctcggtccgcgccaagatcaaggtgcggctgacgcaactg
cgtcccccggccgagatcgaggacgcgctgttcggccacaacggctggcagccgggcgat
gcgtggacggccgagaccaccttgggtcgtgtgttgttcaacgagctgctgccgctgggc
tacgccttcgtgaacaagcagatgcacaagaaggtgcaggccgcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggactccggt
ttctactgggcgacccgcagtggtgtcacggtctcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcctcgactcctacgaggagcgggcggagaaggtcgagaagcagttc
cagcgtggtgctctgaaccatgacgagcgcaacgaggcactggtggagatctggaaggaa
gccaccgacgaggtcggccaggcgctgcgcgagcactacccggccgacaacccgatcatc
acgatcgtcgactcgggcgccacgggtaacttcacccagactcgaacgctggccggcatg
aagggtctggtgaccaaccccaagggtgagttcatcccacgcccgatcaaatcctcgttc
cgtgagggcctgaccgtgttggagtacttcatcaacacccacggtgcccgaaagggcttg
gcggacaccgcactgcgtaccgccgactccggctacctgacccgtcgtctggtggacgtc
agccaggatgtgatcgtgcgcgagcacgactgccagactgagcgcggcatcatggtcgag
ctggccgagcgtcagggcgacggcacgctgatccgcgacccgtacatcgagacctcggcg
tacgcgcggaccctgggcgccgacgctgtcgatgaggccggcaatgtcgttgtggcgcgt
ggtgaggacttgggcgacccggagatcgaggcctgcctggcggcgggtatcacccaggtc
aaggttcgctcggtgttgacctgcaccacgggcaccggtgtgtgcgcgacctgctacgga
cgttcgatggcgaccggcaagctggtcgacatcggtgaggcagtcggcatcgtcgccgcc
caatccatcggtgaacccggcacgcagctgacgatgcgtaccttccaccagggtggtgtg
ggtgaggacatcaccggcggtctgccgcgtgtccaggagctcttcgaggctcgggttccg
cgtggtaaggcgcctatcgccgatgtcaccggtcgggtccggctcgaggacggtgagcgc
ttctacaagatcaccatcgtccccgacgatggcggcgaggaagtcgtctacgacaagctg
tccaagcggcagcggctgcgggtgttcaagcacgaggacggctcggagcgggtgctttcc
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctctgccgacccgcacgag
gtgctgcgtgtgcagggcccgcgtgaggtgcagatccacttggtccgcgaggtccaggag
gtctaccgggcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtgcgccag
atgctgcgccgggtcaccatcatcgactcgggcgcgacggagttcctgcccggctcgctg
atcgaccgtgcggagttcgaggcggagaaccgccgggtggtggccgaaagcggcgagccc
gcggccggtcgtccggtgctgatgggtatcaccaaggcatcgctggccaccgactcgtgg
ctgtcggcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggct
ggtaccggtatcaaccgctaccgcaacatcgcggtgcagccgaccgaagaggcacgtgcc
gcggcgtacacgatcccgtcctacgaggaccagtactacagcccggacttcggccaggcc
accggtgctgcggttccgttggacgactacggctacagcgactaccggtag
DBGET
integrated database retrieval system
