Mycobacterium marinum E11: MMARE11_40010
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Entry
MMARE11_40010 CDS
T04774
Symbol
deaD
Name
(GenBank) cold-shock DEAD-Box protein, DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmae
Mycobacterium marinum E11
Pathway
mmae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MMARE11_40010 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmae03019
]
MMARE11_40010 (deaD)
03009 Ribosome biogenesis [BR:
mmae03009
]
MMARE11_40010 (deaD)
Enzymes [BR:
mmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
MMARE11_40010 (deaD)
Messenger RNA biogenesis [BR:
mmae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MMARE11_40010 (deaD)
Ribosome biogenesis [BR:
mmae03009
]
Prokaryotic type
rRNA helicases
MMARE11_40010 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
UvrA_inter
CMS1
B_solenoid_dext
Motif
Other DBs
NCBI-ProteinID:
CDM78138
LinkDB
All DBs
Position
complement(4864227..4865942)
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AA seq
571 aa
AA seq
DB search
MANPENLPAVPPATFADLQIHPSVMRAIADVGYESPTGIQAATIPALMAGSDVVGLAQTG
TGKTAAFAIPILSKIDTTSTATQALVLAPTRELALQVAEAFSRYGAHLSRLNVLPVYGGS
SYAIQLAGLRRGAQVVVGTPGRVIDHLERRTLDLSRVDYLVLDEADEMLTMGFAEDVERI
LSETPEYKQVALFSATMPPAIRKITTRYLHDPLEVKSEAKTATAENISQRYIQVAGPRKM
DALTRVLEVEPFEAMIVFVRTKQATEEVAEKLRARGFSAAAINGDIPQGQRERTITALRD
GGIDILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALLFVSPRE
RHLLKLIEKATRQTLTEAELPTVEDVNAQRVAKFADSITHALSNTGIELFRRLVEDYERE
HNVPMADIAAALALQSRDGEEFLLAPDPPPDQRERHPRNERKERPERRRSGGAFSTYRIS
VGKRHKIGPGAIVGAIANEGGLHRSDFGHITIGPDFSLVELPVKLPRETLKKLEQTRISG
VLINLRPDRPADKAYKARRNDGGKPRRKRLG
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccccgaaaacctgcctgcggtaccccctgccaccttcgccgacctacagatt
catccgtcggtcatgcgagcaatcgccgacgtcggttacgagtccccgacggggattcag
gccgctaccatccccgcgctgatggcgggttccgacgtggtggggctggcgcagaccggc
accggcaagacggcggcgttcgcgatcccgattctgtccaaaatcgacaccaccagcacc
gcaacccaggcgctcgtgctggcccccacccgcgagctggcccttcaggtggctgaggcg
tttagtcggtacggcgcccatctatcgcgcctcaacgtgcttccggtttatggcggatcg
tcgtatgccatacaactggccggtctgcggcgcggcgcgcaggttgtggtggggacaccc
gggcgggtcatcgaccacctggaacgacgaacgcttgatctgtcccgggtggactacttg
gtgctcgacgaggcagacgagatgctcaccatgggcttcgccgaagacgttgaacgcatc
ctgtccgaaaccccggaatacaagcaggtcgcattgttctcggcgaccatgccgccggca
atccgaaaaatcaccactagatatctgcacgatccgctggaagtcaaatccgaagcgaaa
accgctaccgccgaaaatatttcgcagcggtacatccaggtggccggtccgcgcaagatg
gatgcgcttacccgggtgctcgaggtcgagccgtttgaggcgatgatcgtgtttgtccgc
accaaacaggccaccgaggaggttgccgagaagctgcgggcacgagggttttccgcggcg
gccatcaacggcgatattccgcagggacagcgcgagcgaaccatcacggcgctgcgcgac
ggcggcatcgacatcctggtcgccaccgacgtggccgcgcgcgggctggacgtcgagcgg
atatcgcatgtgctcaactacgacatcccgcacgacaccgagtcctacgtgcaccgaatt
gggcgcaccggtcgggccgggcgttcgggtgcggcattgttgtttgtctccccgcgggag
cgacacctgctcaaactgatcgaaaaggccactcggcaaacactgaccgaggccgagttg
cccaccgtggaagacgtcaacgcccagcgggtggcgaagttcgccgattccatcacccat
gcgctgagcaatacgggcatcgagttgttccgcaggctggtcgaggactacgagcgcgag
cacaacgtcccgatggctgacatcgctgcggcgctggcattgcagtcgcgcgacggcgag
gaattcctgctggcgcccgatccgccaccagatcagcgcgagcgccatccccgcaatgag
cgcaaggaacgtccggagaggcgcagaagcggcggcgccttcagcacgtatcgcatctcg
gttggcaaacggcacaaaatcggtccgggcgcgatcgtcggcgccatcgccaacgagggc
ggattgcaccgcagcgacttcggccacatcactatcgggccggatttctcgctggtggag
ctgccggtcaaactgccccgcgaaacactgaaaaagctcgaacaaaccaggatttcgggt
gtgttgatcaaccttcgccccgaccgccccgccgataaggcgtacaaggcgcgccgcaac
gatggtggcaaacctcggcggaaacgcctcggatga
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