Mycobacterium marinum E11: MMARE11_42800
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Entry
MMARE11_42800 CDS
T04774
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor Mfd (TrcF)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmae
Mycobacterium marinum E11
Pathway
mmae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MMARE11_42800 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmae03400
]
MMARE11_42800 (mfd)
Enzymes [BR:
mmae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MMARE11_42800 (mfd)
DNA repair and recombination proteins [BR:
mmae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MMARE11_42800 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
Cas3-like_C_2
ResIII
LSDAT_prok
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CDM78417
LinkDB
All DBs
Position
complement(5185796..5189464)
Genome browser
AA seq
1222 aa
AA seq
DB search
MTAPGAASPDTPIAGLVDLALTAPTFQQLIARASDRPDELTLVGPASARSFVASALAQQG
PLLVVTATGREADDVTAELRGVFGEAVALFPSWETLPHERLSPGVDTVGARLLLLRRLAH
PDDTRLGPPLRVVVTAVRSLLQPMTPQLGRQEPVSLSVGQEIGFDEVIARLVELAYTRVD
MVGRRGEFAVRGGILDLFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVSTLVAV
ACRELLLTEDVRGRAAALAAQHPASENTVTGSVIDMLAKLAEGIPTDGMEALLPVLRPDD
HALLTDQLAEDTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAAMGTDAPVDVEALGGS
GFAELDQVQTAASSSGHPWWTLSQLSEESATELEVRAAPSARGHQKDIDDIFAMLRAHVS
TGGYAVMVEPGTGTAHRMVERLAESDIPAAMLEPGAAPKLGVVGVLKGPLRDGVIVPGAN
LVVVTETNLTGNRATAVEGKRLAAKRRNTVDPLALTAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWTNTKTKAR
KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK
SIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV
TVKGLSRFTDPAESRTVIEGMADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH
KEHIKSLRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQI
AAALRRELLRDGQAFYVHNRVSSIDDTAARIRKLVPEARVVVAHGQMPEDLLERTVQGFW
QREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
QAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKMVTTPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLATATSD
SGVAAVVDELIDRYGALPEPALRLVAVARLRLLCRASGITDVSAPSSATVRLAPMDLPDS
AQVRLKRMYPGGHYRATTSTVQVPIPRDGGVGAPRIRDVELVQMVANLVTALAGKPQQDI
GRTSLSEDDAGATASGKERQAR
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctagcccagataccccgatcgcggggctcgtcgacttggcg
cttaccgcgcctactttccagcaactcatcgcgcgtgcctccgatcgccctgatgaattg
acgttggtcggcccggccagcgcgcgctccttcgtcgccagcgcactggcccaacaggga
ccgctgctcgtggtcaccgccaccgggcgtgaggccgacgacgtaaccgcggaactgcgg
ggagtcttcggcgaagccgtggcgttgttcccgtcctgggagacccttccgcacgagcgg
ctctcacccggtgtcgacacggtcggcgcccggctgctgctgctgcgccggctggctcat
cccgacgacacccggctgggcccgccgttgcgcgtggtggtgaccgcggtgcgctcgctg
ttgcagccgatgacgccgcaactgggccggcaggaaccggttagtttgagtgtcggacaa
gaaatcggcttcgatgaagtcatcgctcggctggtcgagctggcctacacccgggtcgac
atggtgggccggcggggcgagttcgccgtccgcgggggcattctggacctcttcgcgccg
accgccgagcacccggtgcgggtcgaattctggggcgacgagatcaccgaaatgcgcatg
ttctcggtcgccgaccagcgctccattcccgagatcgaggtcagcacgctggtcgcggtg
gcctgccgggagctgcttctgaccgaagacgtacgggggcgagccgcggcgctggccgcc
cagcacccggcttcggagaacaccgtgaccggcagcgtcatcgacatgctggcaaaactg
gccgagggcatcccgaccgatgggatggaagcgctgctgccggtgttgcgccccgatgac
catgcgctgttgaccgatcagcttgccgaggacactccggtgctggtgtgcgacccggag
aaggtgcgcacccgggccgccgatttgatcaagacgggccgcgaattcctcgaggcctca
tggtcggtcgcggcgatgggaaccgacgcgcccgtcgacgtcgaagccctgggcgggtcc
ggctttgccgagctggaccaggtgcagaccgcggcgagcagttccggacacccgtggtgg
acgctgagccagctgtccgaggaatcggcgacggagctggaggtccgcgcggcaccctcg
gcgcgtgggcaccagaaggatatcgacgacatctttgcgatgctgcgcgcgcacgtctcg
accggcgggtacgcggtgatggtggagcccgggaccggcaccgcccatcgcatggtggag
cggctggccgaatccgacattcccgccgccatgctggaacccggcgccgcacccaagttg
ggcgtggtgggcgtgctcaaggggccgctgcgcgacggcgtcatcgtccccggagccaac
ctggtcgtggtcaccgagacgaatctgaccggcaaccgggccacggcggtcgagggcaag
cgcctggcggccaagcggcgaaacaccgtcgatccactggccctgacggccggcgatctg
gtggtgcacgatcagcacggcatcggccggttcgtggagatggtcgagcgcaccgtcggg
ggtgcccgacgcgagtacctggtgctcgaatacgcctccgccaagcggggcggtggttcc
gacaagctgtatgtcccgatggattcgctagaccagttgtcgcgatatgtcggtgggcag
gcaccagcactgagccggctcggcggcagtgactggaccaacaccaagaccaaggcgcgc
aaggcggtgcgggaaatcgccggcgaactggtggcgctctacgccaagcggcaggccagc
cccgggcatgcgttcgcccctgacacaccgtggcaggccgagatggaggacgcgttcggt
ttcaccgaaaccgtcgaccagctcaccgcgatcaccgaggtcaagggcgacatggaaaag
tccatcccgatggaccgggtgatctgcggtgatgtcggctacggcaagaccgaaatcgcg
gtgcgggcggcgttcaaggccgttcaggacggcaaacaggttgccgtgctggtgcccacc
acgctgttggccgaccagcatctgcaaaccttcaccgaccggatggccgggttcccggtc
acggtcaagggtctgtcccgcttcaccgaccccgccgagtcacgcacggtgatcgagggc
atggccgacggatcggtcgacgtggtgatcggcacgcaccggctgctgcagaccggcgtg
cgctggaaagacctgggcttggtcgtggtcgacgaggaacagcggttcggtgtcgagcac
aaggagcacatcaagtcgttgcgcagccacgtcgacgtcttgacgatgagcgccaccccc
attccgcgcacgctggagatgagcctggccggtattcgggagatgtcgaccatcctgacg
ccccccgaggagcgctacccggtgctgacctacgtgggaccccatgacgacaaacagatc
gccgcggcgctgcgccgcgagctgctgcgcgacgggcaggcgttctatgtgcacaaccgg
gtcagttccatcgacgacaccgccgcgcggattcgcaaactcgtgcccgaggcgcgggtg
gtcgtcgcgcatgggcagatgcccgaggatctgctggaacgcaccgtccagggattctgg
cagcgtgaattcgacatcttggtctgcaccacgatcgtggagaccggcttggacatctcc
aacgccaacacgctgatcgtcgaacgggccgacaccttcgggttgtctcagctgcaccag
ctgcgcggccgagtgggccgtagccgtgagcgcggttacgcctacttcttgtacccgccg
caggcgccgctgaccgagaccgcctacgaccggttggcgaccatcgcgcaaaacaacgag
cttggcgcgggcatggcggtcgcgctcaaggacctggagatccgcggcgcgggcaacgtg
ctcggcgtcgagcagtcggggcacgtcgccggagtcggcttcgacctctatgtgcggttg
gtgggcgaggccgtcgaggcgtatcgggccgccgccgacggcaagatggtgaccactccc
gaggagcccaaggatgtgcggatcgacctgccggtcgacgcccacctgccaccggactac
atcggcagcgatcgcctgcggttggaggcctaccggcggctcgccaccgccacctccgac
agtggcgtcgcggccgtggtggacgaactcatcgaccgctacggggctttgccggagccg
gcgctgcggctggtcgcggtggcgcggttgcggctgctgtgccgggcctcgggcatcacc
gacgtgtcggcgccgtcttcggcgacagttcggctggcaccgatggatctgcccgattcc
gcccaggtgcggctcaagcggatgtatccgggaggccactaccgggctacgacgtccacc
gtgcaggtacccatcccgcgtgacggtggcgtcggtgcgccgcgcatccgggatgtggaa
ttggtgcagatggtggccaatctggtgacggcattggcaggcaagccgcaacaagatatt
ggtagaaccagtttgtccgaagacgatgcgggcgccaccgcgtcgggtaaggagcggcaa
gcgcgatga
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integrated database retrieval system
