Methylophaga marina: GCM100_04330
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Entry
GCM100_04330 CDS
T09183
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03030
DNA replication
mmaf03430
Mismatch repair
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM100_04330 (dnaE)
03430 Mismatch repair
GCM100_04330 (dnaE)
03440 Homologous recombination
GCM100_04330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmaf03032
]
GCM100_04330 (dnaE)
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_04330 (dnaE)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCM100_04330 (dnaE)
DNA replication proteins [BR:
mmaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GCM100_04330 (dnaE)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GCM100_04330 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
DUF6282
Motif
Other DBs
NCBI-ProteinID:
BDZ72714
LinkDB
All DBs
Position
complement(438151..441648)
Genome browser
AA seq
1165 aa
AA seq
DB search
MPKSFVHLHLHTDYSLVDGLVRVKPLVKQVADAGMPAIAITDHHNLFAAVKLFNAAMQAG
VKPILGADLRLRDPNDAKQSTRFVLLCMNLDGFHNLSRLLSKAYMEGQHLGVPMLEAEWL
QGQTDGLICLSGGREGILGKALLNHQKDEIEQQLNFWQTLFPDRLYMELIRTGREDEERF
IRAATALAAEKDLPVVATNDVRFLTPDQFEAHEAKVCIHEGRQLDDPRRPRNYSEHQYLR
SAEEMTALFEDIPEAIENTVEIAKRCNLQLTLGEHYLPDFPVPEGMTIEQFFSEESFKGL
AERLEVLFPDEADREANKARYEERLQIELDVINQMGFPGYFLIVADFIQWAKNNDVPVGP
GRGSGAGSLVAYALKITDLDPLQYDLLFERFLNPERVSLPDFDVDFCMDGRDRVIEYVSQ
HYGRDHVSQIITFGTMAAKAVLRDVGRVLGHPYGFVDQLAKLVPFELKMTLSKAMEQEPL
LKERYDNEEEVKTLIDLALQLEGLTRNVGKHAGGVVIAPKVLTEYTPIYSEHNGAGLVSQ
FDKDDVESVGLVKFDFLGLKTLTVIDWAMKNVRTLLPKEDADKIDIANLPLDDKPTYALL
KRCETTAVFQLESRGMKELVKRLQPDNFEDIVALVALFRPGPLQSGMVDDFVNRKHGRAK
VDYPHPDLEPVLKPTYGVIVYQEQVMQIAQILANYSLGGADMLRRAMGKKKPEEMAKQRL
LFLEGAAKRGIEEKEAGPIFDLMEKFAEYGFNKSHSAAYALVAYQTAWLKAHYPAAFMAA
VLSADMDNTDKVVGLIDECRDMKLKVLPPDVNHSKIKFTVEDERTIRYGLGAIKGVGESA
LAGIVSEREQGETFSSLYDFCRRVDMRKINRRVMESLVKAGAMDSLGGHRASIEASLTKA
MQIADQHRRNKDSGQNDLFGLSPEVDSGQDEPLEQAAEWAEEHLLQAEKDTLGLYLSGHP
IDRYQKELAEFIPKRINELDAPESKGYQRNEKPVLTAGLVVAIRTMKSKNGGRMAFITLD
DQSGRLEVRVFADVYDQYQSFIQPDKLVVIQGKIGQDNFTGGLAATAEKVFDITGAREAF
GHSLQINIDNKDKVSQWIEQMKNTLTPFKGGALSLELLYQNEQASTVIMLGDDWQVTPSD
TLMSQLAMLPESQNVTVRYRATMTN
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaatcgtttgtccatcttcatttgcatactgattattctctggttgatggttta
gtcagagtcaaacccttggtcaagcaagtggccgatgcaggcatgcctgctattgcgatc
accgatcatcataatttattcgcggcagtgaaattatttaatgcggcgatgcaggctggt
gtgaaaccgatattaggtgccgatctgcgtttgcgtgatccgaatgacgccaagcaaagc
acgcggtttgtgttgctgtgtatgaacctggatgggtttcacaatctgtcacgcctgtta
tcaaaagcctatatggaaggccagcacctcggtgtaccgatgctggaagctgagtggttg
caaggccaaactgatggactgatttgtttatctggcggtcgtgaaggtattttgggtaaa
gccttactcaatcatcagaaagatgaaattgagcagcagcttaacttctggcagacattg
tttcctgaccgtttatacatggagttgattcgtaccggacgagaagatgaagagcggttt
atccgggcagctacagctttagcagcagaaaaagacttaccggtggtcgcgaccaacgat
gtgcgtttcttaacccctgatcaatttgaagcgcatgaagccaaagtctgcatccatgag
ggccgtcagctggatgatccacggcgtccacggaattactcggagcatcaatatcttcga
agcgctgaagagatgaccgccttatttgaagacattcctgaagcgatagaaaatacggtt
gaaattgccaagcgttgtaatctgcaactgacactgggtgagcattatctgcctgacttc
ccagtaccagagggcatgaccattgagcagtttttcagtgaagagtctttcaaaggcctt
gctgaacgcttagaagtgttgttcccagacgaagctgatagagaagcgaataaagcacgc
tatgaagagcgtttgcagattgagctggatgttatcaaccaaatgggcttcccaggctac
ttcttgatcgttgctgacttcatccagtgggcgaagaataatgatgtgccggttgggcca
ggacggggttcgggtgcaggttctctggtggcttatgccttaaaaatcaccgaccttgat
cccttgcaatatgacttgctgtttgaacgttttcttaaccctgagcgtgtttctttgccc
gactttgacgtcgacttttgtatggatggtcgtgaccgggttattgaatatgtgtcacaa
cattatggtcgggatcacgtatcacagattattaccttcgggaccatggcagccaaagcg
gtattgcgtgatgtcggccgtgtattaggtcatccctatggctttgttgatcagctcgca
aaattagtcccgtttgaattaaagatgacactcagcaaagcgatggagcaagagccattg
ctgaaagagcgttatgacaatgaggaagaagtcaaaaccctgattgacctcgctttacag
ctggagggcttaaccagaaacgtcggtaaacatgccggtggtgttgttatcgcgccaaaa
gtattgaccgagtacacgccaatttatagtgagcacaatggtgctggtcttgtctctcag
tttgataaagatgatgtggagagtgtcggtctggtgaagtttgactttctgggcctaaaa
acgctgacagtgattgactgggcaatgaaaaacgtccgcacgctgctacctaaagaagac
gccgataaaatcgatattgccaatctaccattggacgataaaccaacctacgctttattg
aagcgttgtgaaacaactgccgtattccagcttgaatcgcgtgggatgaaagagctggtt
aaacgcttacaacctgataattttgaggatatcgtggccttggttgcgttattccgtcct
ggtccattgcaatcgggcatggtagatgactttgttaaccgtaaacatggtcgggcaaaa
gttgattaccctcatcccgatcttgagcctgtattgaagccaacctatggagtcattgtc
tatcaggaacaggttatgcaaatcgcccagatcctggcgaactatagcctgggtggcgcc
gatatgttgcgccgtgcaatgggtaagaaaaaaccggaagaaatggccaaacaacgttta
ttgttcctcgaaggggcagctaaacggggcattgaggaaaaagaagccggaccgattttc
gacttgatggaaaaattcgctgagtatggttttaacaaatctcactcggcggcttatgcc
ttagtcgcttatcaaaccgcctggttaaaagcccattatcctgccgcgtttatggcagcc
gtgttatctgcggatatggataatacggataaagtcgttggcttgattgatgagtgtcgt
gatatgaaactgaaggtgctaccacctgatgtgaatcacagcaaaatcaaattcaccgtg
gaagatgaaagaacgattcgttatggcttaggcgcaattaaaggcgtgggtgagtctgcc
ctggccggtattgtgtctgagcgtgaacagggcgaaaccttcagttctttgtatgatttt
tgtcgccgggttgatatgcgtaagattaaccgtcgggtgatggagtcgcttgtgaaagcg
ggtgccatggactctctcggtggacaccgcgccagtattgaggccagcctgacaaaagcg
atgcagatcgccgatcaacatcggcgtaataaagacagtggtcagaatgatctgtttgga
ctcagtccggaagttgatagcggtcaggatgagcctctggaacaggccgcggagtgggca
gaagaacatttattacaggctgaaaaagacaccctgggtttatacctgagtggtcatccg
attgatcgttatcaaaaagaattggctgaatttatccccaaacgtatcaatgaactggat
gcgcctgaatccaaagggtatcagcgtaatgaaaaaccagtgttaactgctggcttggtg
gtggcgattcgcaccatgaagtcaaaaaatggcggccgtatggcttttatcacattggat
gatcagagtggtcgtctggaagtgcgagtgtttgccgatgtttatgaccaatatcagagc
tttattcagcctgacaagctggtagtgattcaaggcaaaatcggacaggacaacttcact
gggggcctagccgcgacagcagaaaaagtgtttgatatcactggagcgcgcgaagcgttt
ggtcattctctccagattaatattgataataaagacaaggtcagtcagtggatagaacaa
atgaaaaatacgctgacgcctttcaagggtggtgctttatcactggagttgttatatcag
aacgaacaggcaagcacggtaattatgttaggtgatgactggcaggttacccccagcgat
actttgatgagtcagttagctatgttgccggaaagtcaaaacgtcaccgttcgataccgt
gctacgatgacaaattga
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