Methylophaga marina: GCM100_05710
Help
Entry
GCM100_05710 CDS
T09183
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmaf03009
]
GCM100_05710 (rlmD)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
GCM100_05710 (rlmD)
Ribosome biogenesis [BR:
mmaf03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
GCM100_05710 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
RrnaAD
TRM5-TYW2_MTfase
MTS
Cons_hypoth95
Methyltransf_11
Methyltr_RsmB-F
PCMT
Methyltransf_23
UPF0020
Methyltransf_15
Methyltransf_12
Ubie_methyltran
CMAS
PrmA
Motif
Other DBs
NCBI-ProteinID:
BDZ72852
LinkDB
All DBs
Position
complement(579032..580366)
Genome browser
AA seq
444 aa
AA seq
DB search
MARRSRRQRIPQELVTAEIESLSHDGRGIARIEGKTVFVDGALAGEKVNFQYSRVHKKYD
EARTVEVLSAADDRVEAKCQHFSICGGCSLMHMSPEAQLAHKQATLAEHFTHFGNLSPEQ
WLEPLTGPLWGYRRKARLGVKYVAKKEQVLVGFREKSSPYIAMLEQCEVLDPRVGHRLTD
LASLIGGLEAYNRIAQIEVAMDDEHVALVFRNLDELSETDKNALISFGQNNNLWIYQQPG
GPDTVSLLWPESAQLSYAPEPGLNLQFDPSDFTQVNAGINEKMIQRAMTLLDVQDGDRIL
DLFCGLGNFTLPLAKRVTEVVGVEGDAALVQHAKNNAALNALSNAEFEQADLTQTELKDY
PWAQKGFNKILLDPPRSGAFEVLHQLAALGAERLVYVSCNPATLARDAGELVNQHGYIME
SAGIMDMFPHTTHVESIAVFVKKR
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgtagccgcagacaaagaataccgcaagagcttgtgacagcagagattgag
tcattatcacatgatggcaggggaattgctcgcatcgaaggcaaaactgtttttgtagat
ggcgcattagccggagaaaaagtgaactttcaatatagtcgggttcataaaaaatatgat
gaagcgcgcacggtagaagtcttgtctgctgctgatgatcgggtagaggcaaaatgtcag
cattttagtatttgtggcggctgtagtttgatgcatatgtcacctgaagcacagttggct
cataaacaggccacattggctgaacactttactcattttggtaacttaagccctgaacag
tggttggaacctttaaccggtccattatggggatatcgtcgtaaagcacgcctcggcgtt
aaatacgtcgctaaaaaagaacaagttttagtgggctttagggaaaagtcatcgccgtac
attgccatgcttgaacaatgtgaagtgttagatccacgtgtgggtcatcgtttaacggat
ttagcttcattaattggtggattggaagcctataaccgcatcgctcagattgaagtggca
atggatgatgaacatgtcgcattggtgtttcgtaatctggatgaattatccgagactgat
aaaaatgcattgattagctttggacaaaacaataatttatggatttatcagcaaccaggt
gggccggataccgtgtctttattatggcctgagtctgctcagcttagttacgcaccagag
ccggggttgaacttacagtttgacccgagtgactttacgcaggtgaatgcgggtattaac
gaaaaaatgattcaaagggccatgacgctgctggatgttcaggatggagatcgtattctt
gatttgttctgcgggctcggcaactttactttgcctttagctaaacgggtgacagaggtc
gttggcgttgaaggtgatgctgcactggtacaacacgcaaaaaataatgccgcacttaat
gccttatctaatgccgagtttgagcaagcggatctcacccaaacagaattgaaagattat
ccttgggcacaaaaagggtttaataagattttactggatcctcccagaagtggggcattt
gaagtgttgcatcaattagctgcgttaggtgctgagcgattggtatatgtctcatgtaat
cctgcaacgctagcacgtgatgctggcgaactggtgaaccagcatggctacattatggaa
tcggcaggcattatggatatgttcccacataccacccatgtcgagtctattgctgtattt
gtaaaaaaacgttaa
DBGET
integrated database retrieval system
