Methylophaga marina: GCM100_06320
Help
Entry
GCM100_06320 CDS
T09183
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmaf
Methylophaga marina
Pathway
mmaf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GCM100_06320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_06320
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GCM100_06320
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_ECF
Sigma70_r4
HTH_23
HTH_7
HTH_24
HTH_11
HTH_40
GerE
TnsD
HTH_28
HTH_Tnp_ISL3
HTH_3
MarR
HTH_36
HTH_31
HTH_10
HTH_IclR
Fe_dep_repress
HTH_38
HTH_29
Crp
Motif
Other DBs
NCBI-ProteinID:
BDZ72913
LinkDB
All DBs
Position
complement(644864..645376)
Genome browser
AA seq
170 aa
AA seq
DB search
MSVFQESEQQTISNLYRQHHTWLFRWLRGKVESTESAADISHDIFVTLLAREEQLLLTEP
RAFLTTLAKRSVANHWRRQQVEKAYLEAITDMPESLQPSEEERAIIVETIVDINRRLQGL
PLDVKRAFLYAQLDGMKQQEIAEKLAVSVSTVKRYLTRAAAQCYFAITVK
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtttttcaggagtcagagcaacaaacgatatctaatctctatcgtcaacatcat
acttggctgtttcggtggttacgcggcaaagtggaatctaccgagtctgcggcggacatt
tcccatgatatttttgtcacattactggcgcgcgaagagcaactcttactcacagaacca
cgcgcctttttgacaacattggcaaagcgaagtgtggctaatcactggcgacgtcaacaa
gtagaaaaagcgtatttggaagccattaccgatatgcctgaaagtctccaaccatcagaa
gaagaacgcgccatcattgtcgaaaccatagtggatataaaccggcgtttgcagggctta
ccgttggatgtaaagcgcgctttcctctatgcgcaattggatggcatgaagcaacaggaa
atagctgaaaaattagcggtgtcggtgtccactgttaagcgatacttaactcgggcagca
gcgcaatgttattttgcaatcaccgtcaaataa
DBGET
integrated database retrieval system
