Methylophaga marina: GCM100_06350
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Entry
GCM100_06350 CDS
T09183
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmaf
Methylophaga marina
Pathway
mmaf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GCM100_06350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_06350
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GCM100_06350
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
TnsD
HTH_24
HTH_28
DUF6079_5th
HTH_Tnp_IS1
HTH_20
HTH_40
HTH_30
HTH_38
FliT
HTH_23
PhyR_sigma-like
HTH_Tnp_ISL3
Mga
Motif
Other DBs
NCBI-ProteinID:
BDZ72916
LinkDB
All DBs
Position
647243..647713
Genome browser
AA seq
156 aa
AA seq
DB search
MLYIHNQQWLRSWLYKQLGCNHLAADLLHDTFERLLKRVKNDVIEDSDAYLKTVARHLLT
DHWRKKNIETAYQQCVSELEPDLAPSAEEQVEHLELLIQVDNRLRQLKTDVRQTFIAVQL
EGLNYADTANRLAISISTVKRHLKQAMLCCCFNLSV
NT seq
471 nt
NT seq
+upstream
nt +downstream
nt
atgttgtatatccataatcaacagtggctgcgaagttggctgtataaacaattgggttgc
aaccacctggctgctgacttactacacgatacctttgagcgcttgttaaaacgggtaaaa
aacgatgttattgaagatagtgatgcttatttaaaaacggttgctcgccacctattgacc
gatcattggcgtaaaaagaacattgaaacggcttatcagcaatgcgttagcgaacttgag
ccagatttagcgccatcagctgaagagcaagtggagcatttagagttattaattcaggtg
gataaccgactaagacaactgaaaacagatgttcgtcaaacatttatcgccgttcagctg
gaaggcttaaattatgccgacacagccaatagactcgctatatcgatcagcaccgtgaag
cggcatttgaagcaagccatgttgtgttgttgttttaatttgtcagtataa
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integrated database retrieval system
