Methylophaga marina: GCM100_06630
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Entry
GCM100_06630 CDS
T09183
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmaf03016
]
GCM100_06630 (truB)
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
GCM100_06630 (truB)
Transfer RNA biogenesis [BR:
mmaf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
GCM100_06630 (truB)
Prokaryotic type
GCM100_06630 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
BDZ72944
LinkDB
All DBs
Position
complement(680563..681489)
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AA seq
308 aa
AA seq
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MARRNKKGRDVTGIVIIDKPTGQSSNHILQRVKRLFDAKKAGHTGSLDPLATGVLPVCLG
DATKLSSYLLDADKQYHVTCQLGIITDSGDADGNVLEELPIPEFTESTLNQVIQQFIGEI
DQVPPMFSALKHQGQPLYKLARQGIDVERKARRITIYEIQLLDYQKQSFTLSVRCSKGTY
IRTLVEDISHALGTGGHVTMLRRTAVAGYDLSDAITLTSLQEKSDKQGIKALDELLQQAE
DALPDWPSIQLDEEGTKNISFGRSISVHEPFISANVRLFNVNNEFIGLGEMSAEGVVSPK
RLFANAVA
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacgaaataaaaaaggtcgggatgttaccggcattgtcattattgataagcct
accgggcaaagttcaaaccacattcttcaacgagtcaaacgcctgttcgatgctaaaaag
gctggacatacaggcagtctcgatcctcttgctacaggcgtgcttcctgtttgcttgggt
gatgcgacaaaattatccagttatttattagacgcagataagcaatatcacgttacctgt
cagctgggtattatcaccgacagtggtgatgctgacggtaatgtacttgaagaactgccc
attcccgaatttactgaatctacgcttaatcaagtcatccagcaatttatcggtgagatt
gatcaagttccacctatgttctccgcattaaaacatcagggacaaccgttatataaactt
gcaagacaaggtatcgatgtagaaagaaaagcgcgtcgaattacgatctatgagattcaa
ttgctcgattaccaaaaacagagttttactttatcagtaaggtgtagcaaaggtacctat
attcgtaccttggtagaagatattagccatgccttaggcactggtggccatgttacaatg
ctcagaagaacggcagtcgctggttatgatttatcagacgccattacactaacgtctctt
caggaaaaatcggataagcagggcatcaaagcacttgatgaactattgcaacaagcagaa
gatgcattacccgactggccaagcattcagcttgatgaagaggggacaaaaaatattagt
tttggacgctctatctcggtacatgagccttttataagcgcaaatgtcagattatttaat
gtgaataatgagtttattggtttaggcgaaatgtcagcagaaggtgtggtatcaccgaag
cgtttatttgcaaatgcggtggcttaa
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