Methylophaga marina: GCM100_06810
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Entry
GCM100_06810 CDS
T09183
Symbol
cafA
Name
(GenBank) axial filament protein
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
mmaf
Methylophaga marina
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_06810 (cafA)
03009 Ribosome biogenesis [BR:
mmaf03009
]
GCM100_06810 (cafA)
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM100_06810 (cafA)
Ribosome biogenesis [BR:
mmaf03009
]
Prokaryotic type
rRNA processing factors
GCM100_06810 (cafA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDZ72962
LinkDB
All DBs
Position
complement(699121..700593)
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AA seq
490 aa
AA seq
DB search
MSSEILINVTPSETRAAVVENGLLQEVFIERNEYRGLVGNIYKGKVCRVLPGMQAAFVEI
GLARAAFLHVSDISIPKGQTGDLKEAPNVEPTISSLLREGQEILVQVIKDPMGTKGARLT
TQLSVSSRYLVYMPETEGIGVSLKIETEQERERLKACLISLLDEGAGGYILRTAAEGVSE
AELEADLKFLYRLWAKLQERKQLVKCGDPLHEDLSLAMRALRDLFSADIDRIRIDSEETF
HKAVHFAEGFMPECAARLEHYKGDLPLFDLFSVEDEIQKALQRKVPLKSGGYLIFDQTEA
MTTVDVNTGGFVGHKNLEETIFKTNLEAAHAIARQLRVRNLGGIIIIDFIDMEEIGHREQ
VLRALEKAMQLDRARHNISAVSELGLVEMTRKRTRESLGHILCEPCPCCEGKGYTKNVET
VCYEIFREIVRESKQYETKQFLILASQDVIDRLNDEDSTKVADLEHHIGKPILFQCEPQY
GREQFNVVLM
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagtgaaatattaatcaacgtgacgccgagtgaaactcgtgcagccgtagttgaa
aatggtctacttcaagaagtattcattgagcgtaatgaatatcgagggctagttgggaat
atatacaaaggcaaagtctgtcgtgtcttgcctggtatgcaagcggcttttgtagaaatt
ggcctagcaagggccgcttttttacatgtttcagatatttctattcccaagggccaaacg
ggggatttgaaagaagcgcctaatgttgagccaactattagcagtctgttgcgtgaaggt
caggagattctggttcaggtcataaaagacccgatgggaacaaagggcgcacgtctgaca
acacagctttctgtatcttcgcgatatttagtttatatgccggaaactgaagggattggg
gtttccttaaaaattgaaactgagcaggaacgggaacgcttaaaagcttgcttgataagc
ttacttgatgaaggcgctggtggttatattcttcgtacagcagcagaaggcgtttctgag
gcggaattagaagctgatctgaaatttctttatcggttgtgggcaaaactgcaagaacgc
aaacaactcgttaaatgtggtgacccgctgcatgaagacttatcacttgccatgcgcgcc
ttacgtgatttgttttctgcagatattgatcggatacgtattgactccgaagagaccttt
cacaaagccgtgcactttgctgaggggtttatgcctgaatgtgccgctcggcttgagcac
tataaaggggatttacccttattcgatttattcagtgtagaagacgaaattcagaaagcc
ttgcaacgtaaggtgcccttgaagtctggtggttatctcatttttgatcaaaccgaagcg
atgacaacggtggatgtgaatacaggcggctttgttggtcataaaaatttggaagaaacc
atcttcaaaaccaacttagaagctgcgcatgccattgctcgtcagttacgtgttcgtaat
ttgggtggcatcattatcatcgatttcattgatatggaagaaattggtcatcgtgaacaa
gtgttgcgtgctttggaaaaagccatgcaattagatcgggctcgtcacaatatcagtgcc
gtgtcagagcttgggctggttgaaatgacacgtaaacgaacccgagaaagtttaggccat
attctgtgtgaaccttgcccttgctgtgaaggaaaaggctataccaagaacgtcgagacg
gtatgttatgaaatcttccgggaaattgttcgtgagtccaagcagtatgagacaaaacag
tttctgatactggcgtctcaagatgtgattgaccgattgaatgatgaggattcaaccaaa
gtggctgatttagaacaccatattggtaaacctatactgttccagtgtgaaccacagtat
ggacgtgagcagtttaacgtcgtgctgatgtag
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