Methylophaga marina: GCM100_09090
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Entry
GCM100_09090 CDS
T09183
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_09090 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_09090 (deaD)
03009 Ribosome biogenesis [BR:
mmaf03009
]
GCM100_09090 (deaD)
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM100_09090 (deaD)
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM100_09090 (deaD)
Ribosome biogenesis [BR:
mmaf03009
]
Prokaryotic type
rRNA helicases
GCM100_09090 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
ResIII
AAA_19
Cas3-like_C_2
GET4
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDZ73190
LinkDB
All DBs
Position
897480..899312
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AA seq
610 aa
AA seq
DB search
MSTEQLDSIPSFSELGIAPAIVKAIKEAGYETPSPIQAQSITPLLEGRDLLGQAQTGTGK
TAAFSLPLLSRLNDRQKTPQILVLTPTRELAIQVAEAMQGYGRHMKNFHVLPVYGGQSMG
IQLRQLQRSPQVIVGTPGRILDLIRRGKLPLEDLKALVLDEADEMLRMGFIDDVETILKE
TPETRQVALFSATMPKPIHRVAQRYLNNPVDVHIKSKTSTVDTITQRYWQVTGLHKLDAL
TRILEVEDFDGMIIFVRTKNSTVDLSEKLEARGYASSPLNGDMNQALREKTIERMKAGKI
DILVATDVAARGLDIERMSHVVNYDIPYDTESYVHRIGRTGRAGRKGEAILFVSPREKRM
LGAIEKATKQTITRMQLPSSEDIADRRVMAFKQDLTETIESQDLAFFENLIRQYQEEHNA
DPIEMAAALAFQVQKSRPLNPPVVHSERKQPRERAERGDRPERANRGERGMRSERPPRAE
RSPRRQAAHQAEEGMKTYRIEVGVEQNVEPKHIVGAIANEAGMDSRMIGRITINQDHSLV
DLPDGMPKDIFQHLRKVWVNNKQLEISLPGAEADMSSARSERKPRRNGPPGKTKKRPAIA
AKKQRKANRD
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtccacagaacaacttgactcgatcccctcattcagtgagctgggtatcgctcccgct
attgtcaaagcaatcaaagaagccggttacgaaacaccgtcaccgattcaagcccaaagt
attacgccattattagaaggtcgtgatttgctgggtcaggcccaaaccggtacaggtaaa
acggccgccttttctctccctctattaagtcgtttgaatgatcgtcaaaagacaccacaa
attctggtactcacccccacgcgtgagttagctattcaagtcgctgaagccatgcaaggt
tatggtcgtcatatgaaaaacttccatgtgttacctgtttatggtggtcaaagcatgggc
attcaattacgccagttacaacgtagcccacaagttatcgtcggtacgcctggtcgtatt
cttgatttgattcgtcgcggtaaattacccctcgaagatttgaaagcactggtgctggat
gaagctgatgaaatgctgcgcatgggctttattgatgatgttgaaaccattctgaaagaa
acaccagaaacacgtcaggtggctttattctcagccaccatgcctaaaccaatacaccgt
gttgcacagcgttatctcaataatcctgttgatgtgcatatcaaatcaaaaacatcgacc
gtagatacgatcacacaacgctactggcaggtaaccgggttacataaactggatgcattg
acgcgcattcttgaagttgaagactttgatggcatgattatcttcgtgcgtactaaaaat
tcgacagtggatttatctgaaaagctagaagcacgtggttacgccagttcaccactaaac
ggtgatatgaatcaggcgctacgtgaaaaaaccatcgaaagaatgaaagcaggcaagatt
gatatcttggttgccaccgatgtggctgctcgcggtctggatatcgaacgtatgagccat
gtcgttaattacgatattccttatgacaccgaatcttacgttcaccgcattggtagaacg
ggtcgtgcaggccgtaaaggtgaagcaattttattcgtctctccacgtgaaaaacgtatg
ttgggtgcgattgaaaaagccactaaacagacgattactcggatgcaactgcctagtagc
gaagatattgctgaccgtcgtgttatggcctttaaacaagacctgacagaaaccatcgaa
tctcaagatctcgctttttttgaaaatctgattcgtcagtatcaagaagaacataatgcg
gatccgattgaaatggcggccgcccttgccttccaggtacagaaaagtcgtcctttaaat
cctcctgttgtccattcagaacgcaaacaacctagagagcgagctgagcgtggtgatcgt
cctgaacgagcgaatcgtggtgaacgtggtatgcgttcagaaagaccaccaagagcagaa
cgtagtcctcgccgtcaggcagctcatcaggctgaagaaggtatgaaaacataccggatc
gaggtcggtgtagaacaaaatgttgagccaaagcatatcgtgggtgctatcgccaatgaa
gctggtatggatagtcgtatgattggccgtattacgattaatcaggatcacagcctggtt
gatttgcctgatggtatgccaaaagatattttccagcatttaagaaaagtctgggttaat
aataagcagctcgagattagtctgcccggcgctgaggcagatatgtcatctgcgagatca
gaaagaaaacctcgccgaaatggaccgccaggaaaaaccaagaaacgtccagccatagcc
gcaaaaaagcaaagaaaagctaaccgcgactaa
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