Methylophaga marina: GCM100_10260
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Entry
GCM100_10260 CDS
T09183
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GCM100_10260 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_10260 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_10260 (rpoC)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GCM100_10260 (rpoC)
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GCM100_10260 (rpoC)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GCM100_10260 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
BDZ73307
LinkDB
All DBs
Position
complement(996292..1000491)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKQQTQPEEFDAIRIGLASPKMVRSWSFGEVKKPETINYRTFKPEREGLFCCK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSL
PSRISLFLDMTLRDIERVLYFEAFIVVDPGMTPLEKGQLLSDETFLQAVEEYGDEFDARM
GAEAVQQLLRNINVVKEIETIREEIDGTNSETKIKKLSKRLKLMEAFHESGNKPEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNRMPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LKLHQCGLPKKMALELFKPFIYGKLERAGLATTIKAAKKMVEREGPEVWDILEDVIREHP
VMLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA
RSLMMATNNILSPANGEPVIIPSQDVVLGLYYMTRDRVNEKGEGSVFADLSELRRAYDNR
VVSLHAKVTVRLEETDITLPEPEQTRRIRVETTVGRAILFSIVPKGLPFSVVDRAMTKKA
IGDLINTSYRRLGLKDTVIFADQLMYLGFTQATQSGASVGADDMVIPVEKATILAKAEAE
VEEIASQYASGLVTDGERYNKIIDIWSRTNDQVAKAMMDGIGKDTVTDAEGNAVEQVSMN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDLVVVEEDCGTTLGLNMSPIIEGGDVVEPLGERVL
GRVVAQDLKSSDGERIVLSAGEMIDEAAVNKLESEGIDEVLVRSAITCESRYGVCAACYG
RDLGRGHKINVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTAADNSVALKYKGNIRY
HNIKYVQNSAGKFIAVSRSGELHLIDENGRERERYKIPYGAEMTVADNDAVDAGQVVANW
DPHTHPVVTEVAGIVQLSDLVEGVTVDKTVDEVTGLTSLIVREPKQRSSSAKDMRPMVRL
TDANGSDVFIPGTDIPAMYFLPGGAIVRVSDGQEVEIGDIVARIPQESSKTRDITGGLPR
VADLFEARKPKDPALMAEITGTVSFGKETKGKQRLIITPKEGEPYEELIPKWRHVSVFEG
EHIEKGEMLVDGPEDPHDILRLKGVLALANYMVSEVQEVYRLQGVKINDKHIEVIVRQML
RKVEIDSVGDSKFLKGEQVEYDRALDANDELRAKEKVECTFTPLLLGITKASLATESFIS
AASFQETTRVLTDAAVTGKSDNLRGLKENVIVGRLIPAGTGLAYHKERQRRRQEALGESP
VTKTALTSEDKDEEIKEVS
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttgcttaatttgttaaagcaacaaactcagccagaagaatttgacgccatt
cgcatcggccttgcctcaccaaaaatggtgaggtcatggtcgttcggtgaagtcaaaaaa
cctgaaaccatcaactatcgtacttttaaaccagaacgtgaaggcttgttctgctgcaaa
atctttggtccagtaaaagattacgaatgcttatgtggtaaatataagcgtttaaaacac
cgtggtgtgatctgtgaaaaatgtggtgttgaagtcactgtagctaaagtacgtcgtgaa
cgtatgggtcacattgaattagcaagcccagtagcacatatctggttcctgaaatcgcta
ccatcacgtatttcattatttctggatatgacactacgtgatatcgaacgcgtgctttac
tttgaagcatttatcgttgttgatccaggcatgactcctttggagaagggccagttgctg
tctgacgaaacgttcttgcaggccgttgaagaatacggtgatgaatttgacgctcgtatg
ggtgctgaagctgttcaacagttacttcgtaacatcaatgtcgtcaaagaaattgaaaca
atccgcgaagaaatcgatggtacaaactcagaaacgaaaatcaaaaagctgagcaaacgc
ctgaagttaatggaagctttccatgagtctggcaataagccagaatggatggtaatggaa
gtactgcctgtactcccaccagatcttcgtcctttagtacctcttgatggtggtcgtttc
gcgacatctgatctcaatgatctctatcgtcgtgttatcaaccgtaataaccgtcttaaa
cgcttattagatctgaatgcaccagatatcattgtccgtaatgaaaaacgtatgctgcaa
gagtcagtagacgcattattagataatggtcgtcgtggtcgtgcaattactggtacaaac
cgtatgccattgaaatctttggcagacatgattaaaggtaagcaaggtcgtttccgtcaa
aacctgttaggtaaacgtgtcgattactctggtcgttcagttattgtggttggtccatac
ctgaagttacaccagtgtggcctgcctaaaaaaatggctttagaactatttaaaccattt
atctacggcaaattagagcgtgcaggattggcgacaactatcaaagctgccaaaaaaatg
gttgagcgtgaaggacctgaagtttgggatattctggaagacgttattcgtgagcatcca
gttatgcttaaccgtgcaccaactctgcatagattaggtattcaagcttttgaaccacta
ctcattgaaggtaaagctattcaattgcacccactcgtctgtagcgcattcaatgctgac
tttgacggtgaccaaatggcggtacacgtacctttatcattagaagcacagttagaagca
cgctctttaatgatggcaactaataacatcttgtcaccagcaaatggtgaacccgttatt
atcccatcacaagacgtggtccttggtctttactacatgactcgtgaccgtgtgaatgaa
aaaggtgaaggcagtgtctttgcggacctttcagaactgcgtcgtgcttacgataacaga
gttgtttcgctgcatgcgaaagtaacagttcgtttagaagaaactgatattactttgcca
gaacctgagcaaacacgtcgcattcgtgtagaaacaacagtaggccgtgccattttattt
agcattgtgccaaaaggactgccattctcagtcgtcgaccgtgccatgacgaagaaagcg
ataggtgatttaatcaacactagctaccgtcgcctcggtctgaaagataccgttatcttt
gctgaccagctaatgtatctaggctttacacaagccacacaatctggcgcatcagttggt
gctgacgatatggtgattccagttgagaaagcaaccatattggcaaaagcagaagcagaa
gtggaagaaatcgcttcacaatacgcgtctggtctggtcactgatggcgaacgttataac
aaaattatcgatatctggtcgcgtacaaatgaccaagttgcgaaagcaatgatggatggt
attggtaaggatacagtaacggatgctgaagggaatgctgttgagcaagtatcgatgaac
tctatctatatgatggcggattctggtgctcgtggttctgctgctcagattcgtcagctt
gctggtatgcgcggactgatggctaaaccagatggttcgatcatcgagacaccgatcacg
gcaaacttccgtgaaggtctggacgttttacagtactttatttcgactcatggtgctcgt
aaaggtttggccgatacggcattgaaaacagctaactcaggttacctgacacgtcgcttg
gtcgatgtttctcaagacttggttgtagtcgaagaagattgtggcacaacattaggctta
aacatgtcacctatcattgaaggtggtgatgttgttgaacctcttggtgaacgtgtgctt
ggtcgtgtcgttgcacaagatctgaaatcatctgatggcgagcgtattgtactttcagct
ggtgaaatgattgatgaggcggctgtaaataaactcgaaagtgaaggtattgacgaagtc
ttggtacgtagtgcgattacctgtgaatctcgctatggtgtttgcgcagcttgttacgga
cgtgacttgggccgtggtcataaaattaacgttggtgaagcagtgggtgttattgctgca
cagtccatcggcgagcctggcacacagttaacaatgcgtacgttccacatcggtggtgcg
gcatcgagaacggctgcagataattcagttgccttgaaatataaaggtaatatccgttat
cacaacatcaaatatgtacagaatagtgcgggtaagttcatcgccgtatctcgttcaggt
gagttacacttaattgatgagaacggtagggagcgcgaacgttataagattccttacggt
gctgaaatgacggtggcggataacgatgctgttgatgctggtcaagttgtagcaaactgg
gatccacacactcatccggtcgtaacggaagttgctggtatcgttcaactaagtgattta
gttgaaggtgttacagttgataaaacagtagacgaagtgactggtttgacaagccttatt
gttcgtgagccaaagcagcgtagtagttcagcaaaagacatgcgtccaatggttcgcctg
acagatgcgaatggtagtgatgtgtttattcctggtactgatataccagcgatgtacttc
cttcctggtggtgcgattgttcgtgtaagcgacggccaagaagttgaaatcggtgatatc
gtagcgcgcatccctcaagaaagtagtaagactcgtgacatcactggtggtctaccacgt
gttgccgatttatttgaagcgcgtaagcctaaagaccctgcattgatggctgaaatcacc
ggtacagttagcttcggtaaagaaacgaaaggtaagcaacgactgattatcacaccaaaa
gagggtgagccatatgaagagcttattccgaaatggcgtcacgtttcagtatttgaaggt
gagcacattgagaagggtgaaatgttagttgatggacctgaagatccgcatgatatcttg
cgtcttaaaggtgttctcgctttagctaactacatggtaagtgaagtacaagaagtctat
cgattacagggtgtaaaaattaacgacaagcacattgaagtgattgtgcgtcaaatgtta
cgcaaagtagaaatcgattctgtcggtgatagtaaattcttgaaaggtgagcaggttgaa
tatgaccgcgctttagatgcgaacgatgagttgcgtgctaaagaaaaagtagaatgtacg
ttcacacctttattactgggtattactaaagcgtcactggcaacggagtcctttatttct
gcggcttcgttccaagaaacaacgcgcgttctgacagatgctgctgtcacaggtaagagt
gataacttacgtggcctgaaagaaaacgttatagtcggtcgtctgattcctgcaggtact
ggcttggcgtaccacaaggaacgtcaacgtcgtcgtcaggaggcattaggtgagtcaccg
gtgacaaagactgcgctgacttcagaagataaagacgaagaaatcaaagaggtttcataa
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