Methylophaga marina: GCM100_11690
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Entry
GCM100_11690 CDS
T09183
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03030
DNA replication
mmaf03410
Base excision repair
mmaf03420
Nucleotide excision repair
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM100_11690 (polA)
03410 Base excision repair
GCM100_11690 (polA)
03420 Nucleotide excision repair
GCM100_11690 (polA)
03440 Homologous recombination
GCM100_11690 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmaf03032
]
GCM100_11690 (polA)
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_11690 (polA)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCM100_11690 (polA)
DNA replication proteins [BR:
mmaf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM100_11690 (polA)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GCM100_11690 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM100_11690 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
WHD_BrxR
NYN_YacP
HHH
Motif
Other DBs
NCBI-ProteinID:
BDZ73450
LinkDB
All DBs
Position
1143227..1145968
Genome browser
AA seq
913 aa
AA seq
DB search
MSQSAPFVLVDGSSYLYRAFHAMFKADLRNSAGEPTGAVRGVTAMLRRLLADYPDSPIAV
IFDAKGKTFRDELFAEYKAQRPPMPDDLRSQVQPVHDIIKAMGLPLLVIDGVEADDVIGT
FARQATEKGLDVVISTGDKDMAQLVNQHVTLVNTMTETVLDIEGVKEKFGLPPELIIDFL
ALMGDKVDNIPGVPGVGEKTALSLLQNLGSLKDIYANLEAVRELDFRGAKKMPEKLAENK
EMAELSYQLATIKCDVELDIHLEDIKNQPQDTEALLKLFKELEFRSWISELQSSDTSSTA
NNDSADNITTEQNYDTILDQQQWQVWLEKLQKAELFAFDTETTSLDYLEARIVGVSFAVK
AGEAAYLPLKHDYPGAPEQLDFDSVMQDLKPLLESPKHLKVGQNLKYDRHVLLNHDINLQ
GIAHDTMLESYVLDSTATRHDMDSLAQKYLGRDTIHFEDIAGKGKKQLTFNEIGIEQASP
YAAEDADITLQLHQTLWPKIENIPSLAKVYRELEMPLLPVLNTLERNGVNIDIWMLQQQS
DNMARQIADLEEQAYAVAGQKFNLGSPKQLQEILYEKQQLPVKKKTPKGQPSTAEEVLQE
LADEGYELPQIIMQYRGLSKLKSTYTDKLPLQVNKTSGRVHTSYHQAVTATGRLSSSDPN
LQNIPIRSENGRRIREAFVASDGYVLLAADYSQIELRIMAHLSGDKSLLNAFANGEDIHR
HTASEIFGVALEDVTSDQRRSAKAINFGLIYGMSAHGLSRQLGIERHQAADYMNVYFERY
PGVRQYMDSTRQQAKDQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADI
IKRAMIDIHTWLADADNGIKMIMQVHDELVFEVPKEQLDMARKTIEDFMVKAAQLNVPLE
VGIGVGDNWEQAH
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgagtcaatctgcccctttcgttctggtcgacggttcttcttatctctatcgcgcattt
catgccatgttcaaagcggatcttcgtaactccgctggtgagccgaccggcgccgtcaga
ggtgtgaccgcgatgttacgccgcttattggccgattaccctgacagtccgattgctgtc
atttttgatgcgaaagggaaaaccttccgtgatgagttattcgctgaatacaaagcgcag
cgcccgcctatgccggatgacttacgttcgcaagtgcagccagtgcatgacattattaaa
gccatgggcctgccgctactggtgattgacggcgttgaagcagacgatgtgataggaacc
tttgcgcgtcaagcgactgaaaaaggtctggatgtagtcatcagtactggcgataaagat
atggcccagctggtcaaccagcatgtcacgctggtcaacacgatgacggaaactgtgttg
gatatagagggcgtaaaagaaaagtttggtctgccaccagaactgattatcgactttcta
gctttgatgggcgataaggtggacaacattcccggcgtgcccggtgtgggtgaaaagacc
gccttaagcctgctacaaaatctgggcagcctgaaagatatctatgccaacctggaagcc
gtgcgtgagcttgattttcgtggtgcgaaaaaaatgccggagaaactggcagaaaacaaa
gaaatggcggaactgagttatcaacttgccacgataaaatgtgatgttgaattagatatt
catcttgaagatatcaaaaatcaaccgcaagacaccgaagcactgctcaagttgtttaag
gaactcgagttccgcagttggataagtgaattacaatcttcagatacctcatcaacagcg
aataatgattcagctgataacattacgacagaacaaaattacgacactatcctggatcag
caacaatggcaggtctggttagaaaaactgcaaaaagcggaactgtttgcctttgatacc
gaaaccaccagtctcgactaccttgaagccagaattgtcggtgtttcgtttgcagtaaaa
gcaggggaagcggcttacttaccgctcaaacatgactatccaggtgcaccggagcaattg
gactttgatagtgttatgcaggatctcaaacccttacttgaaagtcctaaacacctcaaa
gtcggccaaaacctgaaatacgatcgccatgtattactcaatcatgacatcaatctgcaa
gggatagctcatgacaccatgctcgaatcctatgtgcttgatagcacggcaacccggcat
gatatggactcattagctcaaaaatatctgggccgagatacgattcattttgaagatatt
gccggaaaaggtaaaaaacaactgacattcaatgagataggtatagaacaagcctcgcct
tatgccgcagaagatgctgatatcactttgcaactacaccagactttatggcctaaaatt
gaaaacattccgtctctggccaaagtgtatcgagaattggaaatgccgctattgccggta
ctaaacacattggaacgtaatggcgtcaatatcgatatctggatgctgcagcagcaaagc
gacaatatggctagacaaattgcggatctcgaagagcaggcttatgccgttgccggtcaa
aaattcaacctgggttcaccaaaacaattgcaagaaattctttacgagaaacagcaatta
ccggtgaaaaagaaaacgcctaaaggtcagccatcaacggcagaggaggtcttacaagaa
ttagcggacgaagggtatgaactgccacaaatcattatgcaatatcgtggactgagcaaa
ctgaaatccacttataccgataagttgcctcttcaggtcaataaaaccagtgggcgagta
cacacttcgtatcatcaggccgtcaccgctactggacgattatcctcctctgatcctaat
ctacagaatattcctatccgcagtgagaatggtcgccgcattcgtgaagcctttgttgca
tcggatggttacgtcttattagcagccgattactcacaaatcgaactacgcattatggcg
catttatctggtgataaaagcttactgaatgcctttgctaatggcgaagatattcaccgt
cataccgcctcagagatctttggtgtggcattagaagacgtcaccagcgatcaacgccgt
agcgccaaagccattaattttggtctgatttatggcatgtctgcacatggcttgtctcga
caactcggtatcgaacgccatcaggctgcggactatatgaatgtctattttgaacgttac
ccaggcgttcgtcagtatatggacagcactcgccagcaggccaaagatcaggggtatgtt
gaaaccatctttggacgacgtctgtacctaccagaaattaattccagtaatggtatgcgc
cgccaatatgccgaacgcacagcgattaatgcgcctatgcaaggcagtgcagctgacatc
atcaaacgcgccatgattgatatccatacctggttagctgatgccgataatggcatcaaa
atgatcatgcaagtacacgatgagctggtatttgaagtgccgaaagagcagctggatatg
gcaagaaagaccattgaagattttatggtgaaagccgctcaattaaatgtgccactggaa
gtgggtattggggttggtgataattgggagcaagcacactaa
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