Methylophaga marina: GCM100_15100
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Entry
GCM100_15100 CDS
T09183
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_15100 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_15100 (rhlE)
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM100_15100 (rhlE)
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM100_15100 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
AAA_25
UvrD-helicase
CMS1
AAA_22
DUF3391
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDZ73791
LinkDB
All DBs
Position
complement(1463106..1464404)
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AA seq
432 aa
AA seq
DB search
MTFSELGLILPLQRAVTESGYTTPSPIQAKAIPAIMEGNDVMAAAQTGTGKTAGFTLPIL
HKLSEGKPARANQARALVLTPTRELAAQVEESIKTYGKYLPLRSAVVFGGVKINPQMMRM
RRGVDVLVATPGRLLDLYQQNAIRFDELEVLVLDEADRMLDMGFIHDIRKIINLLPQKRQ
TLMFSATFSKEIRELAKRLVKNPVEISVAPANTTAKKVKQWIIPVDKKQKPALLNQLIQD
NNWYQVLVFSRTKHGANKLTKYLEDHGLKAAAIHGNKSQGARTRALADFKSNTIQVLVAT
DIAARGLDIDQLPHVINVDLPNVAADYVHRIGRTGRAGAAGEAISLVSADEIDQLKDIEK
LIGNKLERVYVDGFEPTHDVPDSYSLTKKTSAKRHPAKPRSARPHSENTSAKRPARRPPR
NKPLNKTNKKSG
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgacattttccgagttaggtctcattttgccactgcaacgtgccgtgacagagtcaggt
tatacgaccccctccccaattcaagccaaagccattcctgccatcatggaaggtaatgat
gttatggcagcagctcaaacaggtaccggcaaaaccgcaggatttaccttgcctattctg
cataaactttctgagggtaaacctgcccgagcaaatcaggcacgcgcacttgtactcacc
cccactcgcgagctcgccgctcaagtggaagaaagcattaagacctatggtaaatattta
ccattacgttctgccgttgtgtttggtggtgtaaagataaacccacaaatgatgcgtatg
cgtcgtggtgttgatgtgttagtggctacccctgggcgacttctggatctctatcaacaa
aatgccatccgttttgatgagttagaagtgcttgttctggatgaagctgatcgtatgttg
gatatgggatttatccacgatattcgtaagattattaatttactgccacaaaaacgtcag
accttaatgttttcagccacgttttccaaagaaatccgtgagctggcaaaacgtctggtg
aagaatcctgtcgaaatttctgtcgccccagccaacaccacagcaaaaaaagtgaaacag
tggattattcctgtcgataaaaaacaaaaacccgctttgctgaatcaacttatccaggat
aataactggtatcaggttctggtcttttccagaacaaaacatggtgccaacaaactcact
aaatacctggaagatcatgggctgaaagccgccgccattcatggtaataaaagccaaggt
gcgagaacacgagcacttgccgactttaaatccaataccattcaagtgttagtggcaaca
gatattgccgcgcgcggtttagatattgatcaactgccccatgttatcaatgttgatttg
cctaacgtggctgctgattatgtgcatcgaattggtcgaactggacgtgcgggtgccgca
ggtgaggccatctccttggtcagtgccgatgaaatcgatcagctcaaagatattgaaaaa
ttaattgggaataaactggaacgtgtgtatgtggatggttttgaacccacacatgatgtg
cctgatagttatagcttaacgaaaaagacctcggccaagcgtcatccggctaaaccacgc
tcagccagaccgcattcggaaaatacgtcagcgaaacgtcctgctcggcgcccacccaga
aacaaaccattgaataaaactaataaaaagtctggctaa
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