Methylophaga marina: GCM100_16200
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Entry
GCM100_16200 CDS
T09183
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmaf
Methylophaga marina
Pathway
mmaf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GCM100_16200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_16200
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GCM100_16200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_23
PhyR_sigma-like
HTH_28
PCI
HTH_40
GerE
HTH_11
HTH_3
HTH_38
DUF2774
HTH_36
HTH_24
HTH_SB
TnsD
Fe_dep_repress
HTH_VMAP-M9
Motif
Other DBs
NCBI-ProteinID:
BDZ73901
LinkDB
All DBs
Position
complement(1572882..1573382)
Genome browser
AA seq
166 aa
AA seq
DB search
MSQHNIDTLYREHHSWLHRWLRGRLGCEHSAADIAHDTYLKVMLSNSLPTDDQPRRYLTR
IAKSLMIDLFRRRQIEAAYLETIRHLPEQEIPSEETQHIVVETLLEIDQMLQALPTHVRQ
AFLMRKLDGLSYKEIATKMNVSVSSVEKYVAKALAACYLHSLKASS
NT seq
501 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacacaatatcgacaccttatatcgtgagcaccatagctggttacatcgctgg
ctacgtggccgtttgggatgtgaacacagtgccgctgatatcgctcacgatacttacctc
aaagtgatgctttctaactcactgccaacagatgatcagccgcgacgctatctgacacgt
atcgccaaaagcctgatgattgatttatttcgtcgtcggcaaattgaagcggcttatctg
gaaactattcgccatcttccagaacaagagatccccagtgaagaaacccaacacattgtg
gtagaaaccttgttggaaattgaccagatgctgcaagccttacctacgcatgtgcgtcag
gcttttttgatgaggaagctggacggcctgagttacaaagagattgccacgaagatgaat
gtgtctgtgtcttctgtagaaaagtatgtagctaaggcattagcagcctgttatctccat
agtttgaaagcatcatcatga
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