Methylophaga marina: GCM100_22510
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Entry
GCM100_22510 CDS
T09183
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_22510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_22510
03009 Ribosome biogenesis [BR:
mmaf03009
]
GCM100_22510
Enzymes [BR:
mmaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GCM100_22510
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GCM100_22510
Ribosome biogenesis [BR:
mmaf03009
]
Prokaryotic type
rRNA processing factors
GCM100_22510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_Com
Calpain_inhib
Motif
Other DBs
NCBI-ProteinID:
BDZ74532
LinkDB
All DBs
Position
2192844..2194754
Genome browser
AA seq
636 aa
AA seq
DB search
MKRILINATHEEELRVAMVDGQRLFDLDIDTPSREQKKGNIYKGKITRVEPSLEAVFVDY
GAERQGFLPLKEISKTYFKKRDDSDDNNGRLNVQDVLSVGQELVVQIEKEERGNKGAALT
TFISLAGRYLVLMPNSPRAGGISRRIEGDDRAELQEALRSLEVPEGMGMIVRTAGVGKQP
EELQWDLEYLVQLWTAIDVAVKDRNAPFLVYQESNIIIRALRDYLRKDIGEILVDSPEVY
QTGYDFMRMVMPHELSKFKLYQDRVPLFTRYQVESQIESAFRHEVRLPSGGALVIDPTEA
LISIDVNSARANKGGDIEETALNTNLEAAEEIARQLRLRDLGGLVVIDFIDMGPSRNQRE
VENRLREHLKADRARVQVGRISRFGLLEMSRQRLRPALGDAHQEICPRCAGLGHVRGVES
LGLAVLRLIEEEATKDKVTQLIVQLPVPVATFILNDKREQVDIIEKRHGVKVVLIPNPHL
ETPHYDIERIKDGGERNEVSHQLISQPEQEVPVVLRDKPVMEQPAVKGISPAAPAPVIVK
EKEPEQKPSLLKRLLNVLTGKSEPEKEEKPVVDTKKEKAHQNNAHRIVEDVVVLRIIQQI
IRIRNLLIIMNVKNHAVEMIKIRTILSRRRLNQQIQ
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaattttaatcaacgcaacacatgaagaagagttgcgtgtggcaatggtcgat
ggccaacgcctatttgatctggatattgataccccatccagagaacagaaaaaaggtaac
atctataaaggaaaaatcactcgagtagagccgagcttggaagctgtttttgttgactat
ggtgcagaaagacaaggctttttgccactgaaagaaatttcaaaaacgtactttaaaaaa
cgtgatgattctgatgacaacaatgggcgtctcaacgttcaggatgtgctttctgttggt
caggaattagttgtccaaatcgaaaaagaagagcgtggcaataaaggtgcggctctgacg
acttttatcagcttggctggtcgttatttagttctgatgcccaacagtcctcgtgcaggc
ggtatttctcgtcggattgaaggggatgaccgtgcagagttgcaagaagctttacgctcc
ttagaagtcccggaaggcatgggcatgatagtgcgaactgctggtgttggaaaacagcca
gaagagttgcagtgggatcttgagtatcttgtccagctctggacggctattgacgtggct
gtcaaagatcgcaacgcgccatttttggtttaccaggaaagcaatattattatccgtgcc
ttacgtgattacttgcgtaaagacattggtgaaattctggtggattcgcctgaagtgtat
caaacaggctatgactttatgcgcatggttatgccgcatgaactcagtaaatttaaactg
taccaggatagagtgccgctattcactcgttatcaagttgaaagccagattgagagcgct
tttcgacatgaagtgcgtttaccatccggtggcgcattagttatcgatcccacggaagcg
ttgatctcgattgatgttaactcagcacgcgcgaataaaggcggtgatatagaggaaaca
gcacttaacaccaacctggaagctgccgaagaaattgcacgtcagttaagattacgcgat
ctgggtggtttggtcgttattgactttatcgatatggggcctagccgtaatcagcgcgaa
gttgaaaatcgcctgcgtgaacatctgaaagccgatcgtgcacgtgttcaggttggtcgg
atatctcgtttcggtttgctggaaatgtctcgccagcgtttgcgtcctgctcttggtgac
gcccatcaggaaatttgcccacgttgtgctggtcttggccatgtgcgtggtgtggaatcc
ttggggctggcggtattacgcctgattgaggaagaagcaactaaggataaggtcacgcaa
ttaatcgttcaactgcctgtacctgttgccacgttcattcttaatgataaacgcgaacaa
gtcgatattattgaaaagcgtcacggtgtgaaagtggtgttgataccgaatccacacctt
gaaacacctcattacgatatcgaacgtatcaaagatggcggtgagcgaaatgaagtcagt
caccagcttatctctcaaccagaacaagaggttccggtagtattacgcgataaacccgtc
atggaacaaccagcagtgaagggaatatcacccgcagcacctgcaccggtgattgttaag
gaaaaagagcctgaacaaaaacctagcctgctgaaacgtttgttaaatgtgctgacagga
aaaagtgagccagagaaggaagaaaagcctgtcgtggatacaaaaaaagaaaaagctcac
cagaacaacgcacacagaatcgtcgaggacgtggtcgttctaagaataattcagcaaata
atcagaatcaggaatctgctgataataatgaacgtaaaaaaccacgccgtagaaatgata
aaaatacggacaatactgagcagaagaagactgaatcagcaaatccagtaa
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