Methylophaga marina: GCM100_23140
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Entry
GCM100_23140 CDS
T09183
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03420
Nucleotide excision repair
mmaf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCM100_23140 (uvrD)
03430 Mismatch repair
GCM100_23140 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_23140 (uvrD)
Enzymes [BR:
mmaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM100_23140 (uvrD)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM100_23140 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
GCM100_23140 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
Viral_helicase1
DUF3553
Motif
Other DBs
NCBI-ProteinID:
BDZ74595
LinkDB
All DBs
Position
complement(2247579..2249747)
Genome browser
AA seq
722 aa
AA seq
DB search
MDVSELLNDLNKPQREAVAAPLGHARILAGAGSGKTRVLVHRIAWLIQAEGFSAGNILAV
TFTNKAAAEMRGRIEEILGYPPGGMWVGTFHGLAHRLLRSHWKEADLPQNFQILDSDDQL
RMLKRIIRAMELDEAQWPPKQAQWYINAQKDEGLRAKDIQAGHDPYSKNMLAIYLAYEQA
CQRAGVIDFGEILLRSHELWLKRPDILAHYQQRFKQILVDEFQDTNTLQYAWLRLLAGTS
GHLFIVGDDDQSIYGWRGARIENIQQFDTDYQGASTIRLEQNYRSTGNILKAANAVIANN
SERLGKELWTEDDDGDPIQIYNAYNERDEASYLVEQIRKWVENGGKRSDAAVLYRSNAQS
RVIEEALLQAAMPYRVYGGLRFFERAEIKDVLSYLRLVSNRLDDAAFERIVNTPTRGIGA
ATLTQVRQYARERGISMWHSAIEMLDAKAFAARAGNALAGFITLIDSLTPEQDTVMGLNE
LTQLVIDESGLKAHFAKDKTEKGQGRIDNLDELISATKQFHKPEEAEDMSDLDAFLAHAA
LEAGENQADRWEDCVQLMTLHSAKGLEFPIVFMVGMEEGLFPGQKSSDDPVRLAEERRLC
YVGMTRARKTLYLMYTESRFLYGQEMIQRPSRFLSELPTECTEEVRARKNHITPSLNGVR
GRDTQTMNETGIKTGQQVHHQKFGPGIVLDTEGSGKNARVQVNFKHAGSKWLVLAYAKLD
IL
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggatgtctcagagcttttaaacgatctaaacaaaccacaacgtgaagcggttgctgca
cctctaggccacgctaggattctggcgggagccggtagtggaaaaacacgggtattagtc
cacagaatagcctggctgatacaagcagaaggtttttcagcgggtaatattttagctgtg
accttcaccaataaagcggctgcagaaatgcgtggtcgtattgaagagattctgggttat
ccaccaggcggcatgtgggtaggcacctttcatggcttagctcaccgcctattgcgctca
cattggaaagaagccgatctgcctcaaaatttccagattctggatagcgatgatcaactt
cggatgctgaaacgcatcatccgcgcgatggaactggatgaagcacaatggccacctaaa
caggcccagtggtacatcaatgcacaaaaagatgaaggcctgcgtgccaaagatattcag
gcaggtcatgacccttattcaaaaaatatgctggccatttaccttgcctatgaacaagct
tgtcaacgagctggggtcatcgatttcggtgaaattttattaagaagccatgaactctgg
ttaaaacggcccgatattctggcgcactatcagcagcggtttaaacaaattttagtcgac
gagtttcaggatactaataccttgcaatatgcttggctaagattactcgccggaactagc
ggacacctgtttatcgtgggggatgatgatcagtctatctatggctggcgtggtgcacgt
atagaaaatattcaacagttcgacaccgactaccagggtgccagcaccatccgtctagaa
caaaactatcgttctactggcaatattctcaaagcagctaatgcggttattgccaataat
agtgaacgcttaggcaaagaattatggacagaggatgatgacggcgatcccatccagatt
tataacgcttacaacgaacgtgacgaagcctcataccttgtcgagcaaatccgtaaatgg
gtagaaaacggtgggaaaagaagtgatgctgccgtgctctatcgttcgaatgcgcaatca
cgggtcattgaggaagccttactacaagctgctatgccatatcgggtttatggtggctta
cgcttttttgagcgggctgaaataaaagacgttctgtcttatttgcgtctggtatcaaac
cgtctcgatgacgccgcttttgaacgtatcgtcaacacacctacgcgcggtatcggcgct
gccactctcacacaagtacgccaatatgctcgtgaacgcggtatttcgatgtggcacagt
gccatagagatgctcgatgctaaagcctttgcggcacgagcaggtaatgcgctagcgggt
tttatcacactgattgattcactgactcctgaacaagacaccgtgatgggcttaaatgaa
ctgacacagttagtcattgatgaaagtggcctaaaagcccactttgccaaagataagacc
gaaaaagggcaaggtcggattgataacctggacgaattaatctcagcgaccaaacagttt
cacaaacctgaagaagcagaagacatgtcggatctggatgcatttcttgcccatgctgca
ctcgaagccggtgagaatcaggctgaccgctgggaagattgcgtgcaattaatgacatta
cattccgccaaaggtctcgaatttccaatcgtctttatggtgggcatggaagaaggtctg
ttccccggacaaaagtccagtgatgatcctgtccgccttgccgaagagagacggctttgt
tatgtcggcatgacacgcgcgagaaaaaccctctatctgatgtacacagaatcgcgcttt
ctctatgggcaagaaatgattcaacgcccgtcacgttttctgagtgaacttccgaccgag
tgtacagaagaagttcgtgctcgcaaaaaccatatcactcccagcctgaatggtgttcgc
ggtcgagacacacagacaatgaacgaaacaggcatcaaaaccggacagcaggtgcatcat
caaaagtttggcccgggaatcgtgcttgataccgaaggttcaggcaaaaatgcgcgagtg
caagtcaacttcaaacatgctggtagtaagtggttagtactggcttatgctaaattagac
atactttaa
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