Methylophaga marina: GCM100_24630
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Entry
GCM100_24630 CDS
T09183
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GCM100_24630 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_24630 (recB)
Enzymes [BR:
mmaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GCM100_24630 (recB)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GCM100_24630 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PDDEXK_1
AAA_11
ResIII
AAA_22
Helicase_RecD
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
BDZ74744
LinkDB
All DBs
Position
2402772..2406257
Genome browser
AA seq
1161 aa
AA seq
DB search
MSAQFDVNTVELKGINLIEASAGTGKTFTLAELYCRLVVQQKLEVSQILVVTYTRAATEE
LRGRLRARLVSERKQLSQQQQADPQAIKRLQLAIQSFDEAAIYTIHGFCQRALQDFAFES
GHFFDMEMVADEQELRQAVADDFWRRHISSADKAFARYLLQNRQNPESLLQSVSSVIGKP
YLEVIPLPEMATEPLQSLFNEQFDHVQSLWWLQREQAIAVLQDKNLLNGNKYRTASVSSW
IAEMDNLMQAGKQAGLFEKFAKFGHAELTQALKKGQELPELSLWRACDALLDTDQQLQTA
RLLQLQQLRQQLAEYLASELPKRKQQLKLQAFDDLLLNLQQALHGPQADKLIAKIREQFQ
AALIDEFQDTDPIQYDCFHTIFANTEQPVFFVGDPKQAIYSFRGADIFTYLQAKHAASNE
FNLDTNWRSHPRLVQAVNHLFERVPQPFLYEDIPFLPVKAARPDEACLTITGQAVSPLSW
VWMASDKPFNVSDMMQYAADISADQIADLLNQSAAGEVMLTDKDGSQRRLNGGDIAILVR
SHKQATTIQQALRARGVNSVQQSRDSVFETHQAIMLERVLMAIAQPSNDSLIATALATPL
FAKTALDIYQLQQDEQLWLQQTDFFVSLHEQWQQAGFIVMFRALIAALDVQRRWLALADG
ERQLTNLLHLAELIQAYATRRNNTMEAILMWLASQRQAADKSGDAAQIRLESDEQLVKVI
TIHTSKGLEYPIVFCPFLWHQSQFNQSPTVMTFHREDDNQACVAFGEPGFSEAQPIVAEE
QQAEDLRLLYVALTRARERCVIVWAPVKNVQQSALFQLLHPELESVDAGQMQQDLQDMVN
AQNTNMDRVNWDLEAAPIVKQAETTAETLQAREFQGQIQTPWHIGSFTGLSHGQHMELPD
HDAPLLPVETPSSEPRQDRFGFPKGANAGTCLHSLFEHWDFQQQNEELSLLVDKTLGQFG
IDTEWSVTVSSWLEAVVTTSLDKQSGLTLRDIQPHQRLDEMAFFFPVTHLTTKRLKDTLL
PFVADYPILNPIVKSLHFADLSGFMKGFIDLVFVQDGRFYIADYKSNWLGTQAENYQQGP
LDEAMVAHSYPLQYLIYSLALHRYLKTRLPDYNPEQHFGGVYYLFIRGMHPDWGQAGVYF
ERPSSALLEALDLCMSEVGDV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcccaatttgatgtgaatacggttgaactcaaaggcattaatctgattgaagcc
agtgctggcacgggcaaaacgtttacgctggcagagctttattgccgactggtggtacaa
caaaaactggaggtcagccagattttggtagtgacctatacccgtgcagcgaccgaagag
ttacgaggacgtttacgggcaagattggtgagtgagcgtaaacagcttagccaacaacaa
caggcggaccctcaggcgataaaacgtttgcaactggcgattcaaagttttgatgaagcc
gctatctacaccattcatggattttgtcagcgagccctacaggattttgcatttgagagc
ggccatttttttgatatggaaatggtggctgatgaacaagagcttcgacaagcggtagct
gatgatttctggcgtcgccatatcagctcagctgataaagcctttgctcgatatttatta
caaaaccgccaaaatccggaaagcttattgcagtcggtgagcagtgtgatcggcaagcct
tatcttgaagtcatcccattacctgagatggcaaccgaaccattacaaagcttatttaat
gagcaattcgatcatgttcagtcgctgtggtggctacagcgtgaacaagctattgctgta
ttgcaggacaaaaatttacttaacggtaataaatatcgtactgccagtgtcagcagctgg
attgctgaaatggataatctgatgcaggccggaaaacaggcgggcttgtttgagaaattt
gccaagtttggtcatgccgaactgactcaggcattaaaaaaaggtcaggagttacctgaa
ctgagtttatggcgggcatgtgatgctttgcttgatacggatcaacaattgcaaacagcc
cgtttattacagctgcaacaactacgtcagcagttagcggaatatctggcgagtgagcta
ccaaaacgcaagcagcaattaaaactgcaggcttttgatgatctgctgcttaatttgcaa
caggcgcttcacggaccgcaggcagataagctgattgctaaaattcgtgaacagtttcaa
gcagcattgattgatgagtttcaggataccgatccgattcaatacgattgttttcacacg
atttttgcaaataccgaacagcccgtgttttttgtcggcgatcctaaacaggcgatttat
agctttcgtggcgctgatatttttacctatctgcaagccaaacatgctgctagtaatgag
tttaatctggatactaactggcgatctcatccacgtttagtgcaggccgttaatcatctg
ttcgaacgcgtgccacagccttttttatatgaagacattccgtttctaccggtcaaggct
gcacgtcctgatgaagcgtgtttaaccatcactggacaagccgtgtcgcccttatcgtgg
gtatggatggcatctgacaagccatttaatgtcagtgatatgatgcaatacgcggcagat
atttcagctgatcagatagctgatttattaaatcaatctgctgctggtgaggtcatgctg
accgataaagatggcagtcagcgtcgcttgaatggtggtgatattgctatcttagtcaga
agtcacaaacaagcgacaacgattcaacaagcattacgtgctcgtggtgtgaacagtgtg
caacagtcgcgtgacagtgtgtttgaaacccatcaggcaataatgttggagcgggtgtta
atggcgattgctcaaccgagcaatgatagtttgattgccacggctttagccacgccacta
tttgccaaaacggcgttggatatctatcagttacaacaagacgaacagctttggttacaa
caaaccgatttctttgtttctctgcatgagcagtggcagcaagccggatttattgtgatg
tttcgtgccttaattgctgcactggatgtgcagcgtcgctggttagcgttggcggatggt
gaacggcaattaactaacttattgcatttagccgaactgattcaggcgtatgcgacccgc
cgcaataatacgatggaagccattttgatgtggttagcttcacagcgtcaggcggcggat
aaaagtggcgatgcagctcagattcgtctggaaagtgatgagcaactggtcaaagtcatt
accatccacaccagtaaggggctggaataccccattgtgttttgtcccttcctttggcat
cagagccagttcaatcagtcaccgaccgtcatgacctttcaccgtgaagacgataatcaa
gcttgtgtggcatttggtgaacctggtttctctgaagctcaaccgattgtggctgaagaa
cagcaagccgaggatttacgcttactctatgtggcattgactcgtgctcgtgagcgctgt
gtgattgtctgggcaccagtgaaaaatgtgcagcagagtgcgttgtttcagctacttcat
cccgagttagagagtgttgatgcgggtcagatgcagcaagatttgcaagacatggtcaac
gcacaaaacacgaatatggatagggtgaactgggatctggaagcagcgcctatcgtcaaa
caagctgaaacgacagcagagacattacaggcccgagagtttcagggacagattcagaca
ccatggcatatcggcagttttactggcctgagtcatggccagcatatggagttaccagat
catgacgcacccttgctgccagtggaaacgcctagcagtgaaccacgccaggatcgtttt
ggttttccgaaaggcgcgaatgcggggacctgtttacatagcttatttgagcactgggat
ttccagcagcagaatgaagaacttagcttgctggtggataaaacattaggccagtttggc
attgacacagaatggtctgtcactgtgtcatcttggttagaggccgttgtcaccacgtca
ttagataagcaaagcggattgaccttacgtgatattcagccacatcagcgtttagatgaa
atggcatttttctttccagtgacgcatttaacaacaaaacgtttaaaagacaccttactg
ccatttgtggctgattatccaattctcaatcctatcgtgaagtcattacatttcgctgat
ttaagtggctttatgaaaggctttatcgatctggtgtttgtgcaggatggtcgcttttat
attgccgactataaatccaattggttagggacgcaggcagaaaactaccaacaagggcca
ttggatgaggcgatggtggcacatagttatccattgcaatatctgatttacagcctggct
ttgcatcgttatttaaaaacacgattgcctgactataaccctgaacagcattttggtgga
gtgtattacttattcattcgtggcatgcatcctgattggggacaagcgggtgtgtatttt
gagcggccatcttcagcattacttgaggcacttgatctgtgcatgtctgaggtaggcgat
gtctga
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