Methylophaga marina: GCM100_24640
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Entry
GCM100_24640 CDS
T09183
Symbol
recD
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
GCM100_24640 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_24640 (recD)
Enzymes [BR:
mmaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
GCM100_24640 (recD)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
GCM100_24640 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
Viral_helicase1
UvrD_C_2
RecD_N
AAA_11
SLFN-g3_helicase
SH3_13
Helicase_RecD
AAA_22
UvrD_C
AAA_16
PIF1
UvrD-helicase
GvpD_P-loop
nSTAND3
DEAD
NPHP3_N
Herpes_Helicase
TrwB_AAD_bind
AAA
AAA_5
AAA_28
NTPase_1
AAA_7
ABC_tran
DnaB_C
T2SSE
AAA_23
CbiA
Motif
Other DBs
NCBI-ProteinID:
BDZ74745
LinkDB
All DBs
Position
2406250..2407998
Genome browser
AA seq
582 aa
AA seq
DB search
MSDLLKLLRQHGLSELACQFAAYIDRKEQGMRPVVSITAALLSEAIAEGHVCLNLQQLPT
FCQPLKSVLPESVDDWMEILSLAKTVGQPGDYTPLILTEQGLLYLYRYYRDEQDVASLIQ
QRLQPVKDIDLEQLNEDLGRWTSVIEGPDWQKIAVAVALSRQFAVISGGPGTGKTTIVLS
MLNSLQQQSPELHIGLAAPTGKAAARLQQSISTQHAYEVKTLHRLLGITEHNDQGRYHAE
RPLPLDVLIIDEASMIDISLMAKLMRALSPSARLILLGDSQQLASVESGAVLANLSEGKQ
GQFTAEFSEQFPELEIPVTETSASSTLLNSFVRLQHSYRFDKDSTIGQLAKQVNEGDVLA
SLALLNPAANDIWYDTDESRQQSQFITGYQAFIDAVESKQTPQTVVKAFDSFRILAALKQ
GPQSVLSVNRLLMRLLAQRGWRTSLPFYAGRPIMITQNDYRQRLFNGDTGIILYDDSGQL
RACFCFDEEVRWVPINRLPAHETAFAMTVHKSQGSEFDSVSILLPDEISPILNRELLYTA
ITRAKQQVFILSKEGTLRHTIQIRHQRESGLNKQLKHADDGV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatttgctgaagttattgcgccagcacggtttaagcgaattagcttgccagttt
gccgcttatattgatcgtaaagagcagggcatgcgtccagtggtgagtatcacggcagca
ttattatcagaagcgattgccgaaggtcatgtttgtctgaatttgcagcaattaccgaca
ttttgtcaaccactgaaatcggtattacctgaaagcgttgatgactggatggaaatcttg
tcattagccaaaacagtcgggcaacccggtgattacacaccgctgattttgacagagcag
ggcttgctttacctttatcgttattatcgtgatgagcaggatgttgccagtctgattcaa
caacgtttacagcctgtgaaggatattgatcttgaacagctcaatgaagatttaggccga
tggaccagtgtgattgaaggtccagactggcaaaaaatcgctgtagcggtggcattaagc
agacagtttgctgttatttccggtggtcctggcacgggtaaaaccacgatagtattaagc
atgctcaatagtttgcagcagcaatctcccgagctgcatattggtttggctgcaccgaca
ggtaaagcggctgccagattgcagcaatccattagtacgcagcatgcttatgaggtcaaa
acgctgcaccgtttattgggcattaccgagcataacgatcagggccgttaccatgctgaa
cgaccgctgcctttagatgtgttaattatcgatgaagcctcaatgattgatatcagcttg
atggccaaattaatgcgagctttatcgccgtcagccagactgattttattaggtgacagt
cagcaactagcttcagttgagtcgggtgcagtgctggcaaatttaagtgaaggtaaacaa
gggcagttcaccgctgaatttagtgagcagtttcctgagctggagattccagtgaccgaa
acatcagcgtcatccacattgcttaatagctttgtgcgtctgcaacacagttaccgtttt
gataaagacagtactatcgggcaattagctaaacaggtaaatgaaggcgatgtgttagcg
tcactcgctttattgaatccagcagctaatgacatttggtatgacacggatgaaagccgg
caacaatcacaatttataacaggttaccaagcctttatcgacgcggttgagtctaagcaa
actccgcaaacggtcgtaaaagcgtttgattcattcagaattttggccgccttaaaacaa
gggccacaatcggtgttatcggttaatcgcttgttgatgagattgttagcccaacgcggc
tggcgaaccagcttaccgttttatgctggcagaccgatcatgatcacccaaaacgattac
cggcaacggctgtttaatggcgataccggtattattttgtatgacgatagcggccagctc
cgcgcctgtttttgttttgatgaggaagtgcgttgggtcccgattaaccgtcttccagct
catgaaaccgcatttgccatgacggtgcataaaagccagggctcagagtttgatagcgtc
agtattttattaccggatgaaatcagccctattcttaaccgtgaactgctgtacaccgcc
attacccgagccaaacaacaggtgtttattctgagtaaagaaggcacgctgcgtcacacc
attcaaatcagacatcagcgcgagagtggtttaaataaacaattaaagcatgctgatgat
ggcgtttag
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