Methylophaga marina: GCM100_26570
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Entry
GCM100_26570 CDS
T09183
Symbol
pcnB
Name
(GenBank) poly(A) polymerase I
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM100_26570 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmaf03019
]
GCM100_26570 (pcnB)
Enzymes [BR:
mmaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
GCM100_26570 (pcnB)
Messenger RNA biogenesis [BR:
mmaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM100_26570 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
SpoU_methylas_C
Motif
Other DBs
NCBI-ProteinID:
BDZ74938
LinkDB
All DBs
Position
2615000..2616364
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AA seq
454 aa
AA seq
DB search
MLSLNKIFNKLVRGKNGQHPQQGREPLIIPRSEHTISRKQISQHALKVLYTLKEGGYDAY
LVGGCVRDLLLGYEPKDFDVATNASPEQVHALFKRSQLIGRRFKLVHVRFGRDVIEVATF
RAPPEAKQHVDTQGRIMQDNVFGTLEQDAWRRDFTINALYYNIKDFSIIDYTGGMADLNA
GLIRLIGDVETRYREDPVRMLRACRFLAKLGLKLDKETEQGIFDWAHLIRDIPPARLFDE
TLKLYLSGQAAMTHELLCHYGLFEHLYPQTAALLHEEQDGYPRTMLMKALENTDIRIAAG
KPVTPAFLFAAILWEPVRQRTVLLMTNGMPEIPAMQRASSEIIGEQIQRVAVPKRYSLVT
RDIWTLQPRLLKRQGKRAFKTLLHPKFRAGYDFLALRAQAGEPLSETVDWWTKFQTETVK
QQQSMVDALGKEGSVKKPRRRRRRRPAAKKSEQN
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgctgtcgttaaataaaattttcaacaaattggtgagaggcaaaaacggccaacatccg
caacaaggacgcgaaccgttaattatccctcgcagtgaacacaccatatcgcgtaaacag
attagtcaacatgcactcaaagtgctgtataccttgaaagagggcggctatgatgcttat
ctcgtcggtgggtgtgtacgcgatcttttgctaggttatgaaccaaaagactttgatgta
gccaccaatgcctcgccagaacaagtgcatgcgctattcaaacgcagccagttgatcgga
cgacgatttaagctggttcatgttcggtttggacgtgacgttatagaagtcgctactttc
cgtgcgccacctgaggctaaacaacatgttgatactcagggccgcattatgcaggacaat
gtgtttggcactttagaacaagatgcctggcgacgtgattttacgatcaatgcgctctat
tacaatatcaaagatttttctatcatcgattacactggcggaatggccgatctcaatgcg
ggccttatccgtttaattggtgatgttgaaacacgttatcgtgaagatcctgttcgcatg
ttaagagcctgtcgctttttagctaagcttggcttaaagctggataaagagacagagcaa
ggcatttttgattgggcacatttgattcgagatataccgccggcaaggctgtttgatgaa
acactaaaactgtatctgagtggccaggctgccatgacacatgaattactctgtcattac
ggtctgtttgagcatctctacccacaaactgctgcgttgttgcatgaagaacaagacggt
tatccaagaacgatgctgatgaaggcattagaaaatacggatattcgtatcgcagccggt
aagccagtgacaccagcgtttttgtttgcagcaatattatgggagccagtgcggcagcgt
acggttttattgatgactaatggcatgccagaaattccagcgatgcaacgtgcatcatct
gaaattattggagaacagatccaacgtgttgctgttcccaagcgttatagtctggtcacc
cgagatatttggactttgcagccccgcctattgaagcgtcagggaaaaagagcattcaaa
acattattgcatcccaagtttcgtgctggatatgactttttagcattaagagctcaagct
ggtgaaccgttgagtgaaacggtagattggtggacaaaatttcagacagaaacagtgaaa
cagcaacagtccatggtcgatgctctgggcaaagagggcagcgtcaaaaagcctcgccgt
agacgccgtagacgacccgcagcgaaaaagtcggaacaaaattga
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