Methylophaga marina: GCM100_27710
Help
Entry
GCM100_27710 CDS
T09183
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
mmaf
Methylophaga marina
Pathway
mmaf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GCM100_27710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmaf03021
]
GCM100_27710
Transcription machinery [BR:
mmaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GCM100_27710
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
GerE
Sigma70_r4
HTH_11
Sigma70_ECF
HTH_23
HTH_32
HTH_Tnp_ISL3
HTH_24
HTH_40
HTH_VMAP-M9
HTH_29
Xre-like-HTH
PhyR_sigma-like
HTH_28
Motif
Other DBs
NCBI-ProteinID:
BDZ75052
LinkDB
All DBs
Position
complement(2726122..2726640)
Genome browser
AA seq
172 aa
AA seq
DB search
MSNLTYQQDKDVTALYTEHKSWLHRWLKNKLQCDDLALDLVQSTFVRLILKPEKITDLKQ
PRAYLTTIAHGLLNDYWRRKRVEQTYLEALALYPEEFSPSEEHRAITIDTLLELIALLDS
MKKPVRDTFILSQLEGCTYRQIAEKLAVSERTIKTYMAEAMFQCLRLKNAKP
NT seq
519 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaatctcacctatcaacaagataaggatgtcaccgctttatacacagaacataaa
agctggttacatcgttggttaaaaaacaagctgcaatgtgatgatctagctcttgattta
gtgcaatccacttttgtcagattgattctcaaacctgagaaaataacagatttgaaacaa
cctcgtgcatatttaactaccatcgcacatggtctgctgaatgattactggcgccgaaaa
cgggtcgaacaaacttatcttgaagcactggctttatatccggaagagttcagtccgtca
gaagaacatcgggccattacaatagatacattactggaattaatcgccttactggatagt
atgaaaaagccagtccgcgatacttttattttgtctcagttagaaggttgcacttaccga
caaatcgctgaaaaactggccgtgtctgaacgaacaatcaaaacctatatggcagaggcc
atgttccagtgcttacgccttaaaaacgccaaaccgtaa
DBGET
integrated database retrieval system
