Methylophaga marina: GCM100_28860
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Entry
GCM100_28860 CDS
T09183
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
mmaf
Methylophaga marina
Pathway
mmaf03410
Base excision repair
mmaf03430
Mismatch repair
mmaf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GCM100_28860 (recJ)
03430 Mismatch repair
GCM100_28860 (recJ)
03440 Homologous recombination
GCM100_28860 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmaf03400
]
GCM100_28860 (recJ)
DNA repair and recombination proteins [BR:
mmaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GCM100_28860 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GCM100_28860 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCM100_28860 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
Glyoxalase_2
Motif
Other DBs
NCBI-ProteinID:
BDZ75167
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All DBs
Position
2841222..2842976
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AA seq
584 aa
AA seq
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MSVLPDIVARSHDGWEKLPETWPDSLRKIMAARGITDVKQLYFELADLPRPEQLLGMQAA
VELLATALKEQWKVTIVADFDSDGATSCALAIRGLQSMGLKQIHYIVPNRFIHGYGLTPA
LLDDIPALEQPDLLVTVDNGIASISGVKAAHQRGMRVLVTDHHLAGETLPEADAIVNPNQ
ADDPFPYKNLAGVGVCFYVLLGLRQHLRTIGWFEQASVPEPKVGDWLDLVALGTVADVVP
LDKLNRTLVNHGLQRIRRGRACTGIQALIQIAGREREKLVSSDLGFSIAPRLNAAGRMED
MGLGINLLLTEDVQQALNIATQLDSINLERRAVEQTMQVDALKMLEQIDIEENTLRTGYC
LFDEDWHQGVIGLLASRIKEKTYRPVIAFAPGNDDEVKGSARSIPGIHIRDVLARVAAKH
PELLERFGGHAMAAGLTIKKGDLAQFNQAFESALNEMVSSETYLQQLPSDGELSEADCQL
SFAELLTEAAPWGQGFEEPRFHGVFKVSHFRLVGQQQNHLRLQLEMNGNRQINAMAFGQD
KPSWLAENSLVLVRYKIAVNEFRGQKSLQFLVDELMPANTDTHN
NT seq
1755 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtattgcctgacattgttgcgcggtctcatgatggctgggaaaagctccctgaa
acatggccagacagtttgcgaaaaatcatggccgcacgcgggattactgatgtgaagcag
ttatattttgaactggctgacttacctaggccagaacaactgcttggtatgcaggcggcg
gttgaattattagcaacggcgttaaaagaacaatggaaagtcacgattgtggctgacttt
gatagtgacggtgccactagctgtgctttggcgatacgtggtttacagtcaatggggttg
aaacagattcattatatcgtccctaatcgctttatccatggttacgggctgacgccggct
ttacttgatgatattccagcgctggaacagcctgacttacttgtcactgtcgataatggc
atcgcatccatatcaggggtaaaagcggcgcatcaacgtggcatgagagtgttggtgact
gatcatcatcttgccggtgagacattaccggaagccgatgccattgtgaatcctaatcaa
gcagatgatccattcccttataaaaacctggctggtgtgggtgtctgtttctatgtgtta
ctaggactaaggcagcatttacgaacaataggctggtttgaacaggcgtctgtgcctgaa
cccaaagtgggggattggctcgatcttgtcgccttggggacagttgcggatgtggtccca
ctggataaattaaatcgcaccttggtcaatcatggattgcagcggattcggcgggggaga
gcctgtaccggaatacaagcactgattcaaatcgccggtcgtgaaagagaaaaactggtc
tcttcagatttaggatttagtatagcgcccagattgaacgcggctggacgtatggaagat
atgggcctcggcattaatttattgctgacagaggatgttcagcaggcactgaatatcgcc
acacagctggacagtattaatctggaaaggcgcgctgttgagcaaacaatgcaagtagat
gcattgaagatgctggaacagattgatattgaagaaaataccttaaggaccggctattgc
ttatttgatgaagactggcatcaaggcgtgattggtcttttagcctctcgcattaaagaa
aaaacctatcgtccggtgattgctttcgcgcctgggaatgacgatgaagtcaaaggatcg
gcccgttctattcctggcatacatattcgagatgtcctagctcgtgtagcagccaaacat
cctgaactgttagagcgctttggtgggcatgccatggcagcaggtttaacaataaagaaa
ggggatttagcccagtttaatcaggcttttgaatctgcactcaatgaaatggtgtcatcc
gagacatatttgcagcagttaccttcagatggtgaactaagtgaagcagactgccaatta
tcttttgctgagctattaacagaagccgcaccatggggacagggattcgaagaacccaga
tttcatggcgtgtttaaagtaagtcattttcgtctggtagggcagcagcagaaccatcta
agattgcaacttgagatgaatgggaacaggcaaatcaatgccatggcatttggtcaggat
aaaccgagctggttagctgaaaacagtttagtattagtccgttataaaatagctgtgaat
gaatttcgaggccaaaaatccttgcagttcctggttgatgaattaatgccagcgaataca
gatacacataactga
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